miRNA display CGI


Results 21 - 40 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 5' -66.2 NC_001875.2 + 110273 0.74 0.142596
Target:  5'- gGCuGGcCGCGGAGCgCGCGgGCUGCCc -3'
miRNA:   3'- gUG-CC-GCGCCUCGgGUGCgCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 18157 0.73 0.146083
Target:  5'- -cUGGUGCGGcGCgCGCGaCGCCGCCa -3'
miRNA:   3'- guGCCGCGCCuCGgGUGC-GCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 89473 0.73 0.146083
Target:  5'- cCACGGCaaaaGUGGcGCCCuCGCGCCGCa- -3'
miRNA:   3'- -GUGCCG----CGCCuCGGGuGCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 31151 0.73 0.148212
Target:  5'- aCGCGccgcGCGCGGAGUCggacagugugcuaACGCGCCGCUGg -3'
miRNA:   3'- -GUGC----CGCGCCUCGGg------------UGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 12132 0.73 0.149647
Target:  5'- gCGCGGCGCGGAagaGCCCgagcgcaaccaGCGCuuucggcugaaGCCGCUGu -3'
miRNA:   3'- -GUGCCGCGCCU---CGGG-----------UGCG-----------CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 79331 0.73 0.153291
Target:  5'- gCGCGGCGCu--GCCuUugGCGCCGCUGu -3'
miRNA:   3'- -GUGCCGCGccuCGG-GugCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 6482 0.73 0.156638
Target:  5'- uUACGGCGCccaacgcGGAGUgCCGCGCcaacacgcugGCCGCCGu -3'
miRNA:   3'- -GUGCCGCG-------CCUCG-GGUGCG----------CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 23574 0.73 0.160819
Target:  5'- uCACGaGCGCGG-GCaCCGCGUGCUugGCCa -3'
miRNA:   3'- -GUGC-CGCGCCuCG-GGUGCGCGG--CGGc -5'
6737 5' -66.2 NC_001875.2 + 95553 0.73 0.160819
Target:  5'- uCGCuGaGCcCGGAGCCUGCGCGuCCGCCa -3'
miRNA:   3'- -GUG-C-CGcGCCUCGGGUGCGC-GGCGGc -5'
6737 5' -66.2 NC_001875.2 + 68563 0.73 0.164708
Target:  5'- gGCGGCgGCGGucgcGCaCCGCgugGCGCCGCUGg -3'
miRNA:   3'- gUGCCG-CGCCu---CG-GGUG---CGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 69363 0.73 0.164708
Target:  5'- aGCGGCGUGc-GCCCgcuGCGCGCCGUCc -3'
miRNA:   3'- gUGCCGCGCcuCGGG---UGCGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 79868 0.72 0.16868
Target:  5'- -gUGGCGCGuGGUCCACGCGCgCGCg- -3'
miRNA:   3'- guGCCGCGCcUCGGGUGCGCG-GCGgc -5'
6737 5' -66.2 NC_001875.2 + 20766 0.72 0.181116
Target:  5'- uCACGGCGcCGGcgucGUCCACGUagaaGCCGUCGa -3'
miRNA:   3'- -GUGCCGC-GCCu---CGGGUGCG----CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 90030 0.72 0.181116
Target:  5'- -cUGGcCGCGGcGCCgGCGCGCgUGCCGg -3'
miRNA:   3'- guGCC-GCGCCuCGGgUGCGCG-GCGGC- -5'
6737 5' -66.2 NC_001875.2 + 20012 0.72 0.187192
Target:  5'- -cCGGCucgcgcagccgucacGCGGAGCagCCAgGCGCCGUCGg -3'
miRNA:   3'- guGCCG---------------CGCCUCG--GGUgCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 43317 0.72 0.189851
Target:  5'- gCGCGcGCGCGG-GUCgGCGUgguuGCCGCCGc -3'
miRNA:   3'- -GUGC-CGCGCCuCGGgUGCG----CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 113562 0.72 0.189851
Target:  5'- aACGGCGCGGucgcGCaCgGCGCGCCauuggGCCa -3'
miRNA:   3'- gUGCCGCGCCu---CG-GgUGCGCGG-----CGGc -5'
6737 5' -66.2 NC_001875.2 + 43544 0.72 0.189851
Target:  5'- cCGCGGUGCGGAcaaucaCCGCGuCGCCcGCCa -3'
miRNA:   3'- -GUGCCGCGCCUcg----GGUGC-GCGG-CGGc -5'
6737 5' -66.2 NC_001875.2 + 73792 0.72 0.193902
Target:  5'- gGCGGCgGCGGcuggaacGGCa-GCGCGCCGCCc -3'
miRNA:   3'- gUGCCG-CGCC-------UCGggUGCGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 105838 0.72 0.194356
Target:  5'- aCGCGGCuGuUGGGGUCCAgCGaGCCGCCGu -3'
miRNA:   3'- -GUGCCG-C-GCCUCGGGU-GCgCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.