miRNA display CGI


Results 1 - 20 of 237 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6737 5' -66.2 NC_001875.2 + 105838 0.72 0.194356
Target:  5'- aCGCGGCuGuUGGGGUCCAgCGaGCCGCCGu -3'
miRNA:   3'- -GUGCCG-C-GCCUCGGGU-GCgCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 18157 0.73 0.146083
Target:  5'- -cUGGUGCGGcGCgCGCGaCGCCGCCa -3'
miRNA:   3'- guGCCGCGCCuCGgGUGC-GCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 12132 0.73 0.149647
Target:  5'- gCGCGGCGCGGAagaGCCCgagcgcaaccaGCGCuuucggcugaaGCCGCUGu -3'
miRNA:   3'- -GUGCCGCGCCU---CGGG-----------UGCG-----------CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 6482 0.73 0.156638
Target:  5'- uUACGGCGCccaacgcGGAGUgCCGCGCcaacacgcugGCCGCCGu -3'
miRNA:   3'- -GUGCCGCG-------CCUCG-GGUGCG----------CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 95553 0.73 0.160819
Target:  5'- uCGCuGaGCcCGGAGCCUGCGCGuCCGCCa -3'
miRNA:   3'- -GUG-C-CGcGCCUCGGGUGCGC-GGCGGc -5'
6737 5' -66.2 NC_001875.2 + 68563 0.73 0.164708
Target:  5'- gGCGGCgGCGGucgcGCaCCGCgugGCGCCGCUGg -3'
miRNA:   3'- gUGCCG-CGCCu---CG-GGUG---CGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 43317 0.72 0.189851
Target:  5'- gCGCGcGCGCGG-GUCgGCGUgguuGCCGCCGc -3'
miRNA:   3'- -GUGC-CGCGCCuCGGgUGCG----CGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 113562 0.72 0.189851
Target:  5'- aACGGCGCGGucgcGCaCgGCGCGCCauuggGCCa -3'
miRNA:   3'- gUGCCGCGCCu---CG-GgUGCGCGG-----CGGc -5'
6737 5' -66.2 NC_001875.2 + 43544 0.72 0.189851
Target:  5'- cCGCGGUGCGGAcaaucaCCGCGuCGCCcGCCa -3'
miRNA:   3'- -GUGCCGCGCCUcg----GGUGC-GCGG-CGGc -5'
6737 5' -66.2 NC_001875.2 + 89473 0.73 0.146083
Target:  5'- cCACGGCaaaaGUGGcGCCCuCGCGCCGCa- -3'
miRNA:   3'- -GUGCCG----CGCCuCGGGuGCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 124817 0.74 0.142596
Target:  5'- gGCGGCGCuaaaGGUCagaUACGCGCCGCCGg -3'
miRNA:   3'- gUGCCGCGcc--UCGG---GUGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 110273 0.74 0.142596
Target:  5'- gGCuGGcCGCGGAGCgCGCGgGCUGCCc -3'
miRNA:   3'- gUG-CC-GCGCCUCGgGUGCgCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 31689 0.81 0.041833
Target:  5'- -cCGGCGUGGAccgccGCUUGCGCGCCGCCGg -3'
miRNA:   3'- guGCCGCGCCU-----CGGGUGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 74150 0.8 0.046336
Target:  5'- gAgGGCGCGGcGCCCGC-CGCCGCCa -3'
miRNA:   3'- gUgCCGCGCCuCGGGUGcGCGGCGGc -5'
6737 5' -66.2 NC_001875.2 + 70203 0.75 0.106331
Target:  5'- gACGGCGaccacuGGGcGCCCGagGCGCCGCCGa -3'
miRNA:   3'- gUGCCGCg-----CCU-CGGGUg-CGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 81343 0.75 0.117338
Target:  5'- gCGCGGCGCgcuGGuGCCgcgcgCACGCGCCgGCCGc -3'
miRNA:   3'- -GUGCCGCG---CCuCGG-----GUGCGCGG-CGGC- -5'
6737 5' -66.2 NC_001875.2 + 56447 0.75 0.120251
Target:  5'- aCACGGUgaggccggugGCGGGGUCCGCGCGCguguuggucagCGCCa -3'
miRNA:   3'- -GUGCCG----------CGCCUCGGGUGCGCG-----------GCGGc -5'
6737 5' -66.2 NC_001875.2 + 88235 0.74 0.123231
Target:  5'- aACGGCGCa-AGCggCGCGCGCCGCCGc -3'
miRNA:   3'- gUGCCGCGccUCGg-GUGCGCGGCGGC- -5'
6737 5' -66.2 NC_001875.2 + 108566 0.74 0.12628
Target:  5'- uUACGGCGCGGcGGUgCugGCGCUGCg- -3'
miRNA:   3'- -GUGCCGCGCC-UCGgGugCGCGGCGgc -5'
6737 5' -66.2 NC_001875.2 + 49996 0.74 0.13585
Target:  5'- aCGCGGCGCuugucgcgguuGGGGCgCGCGUGgUCGCCGg -3'
miRNA:   3'- -GUGCCGCG-----------CCUCGgGUGCGC-GGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.