Results 1 - 20 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6737 | 5' | -66.2 | NC_001875.2 | + | 118870 | 1.06 | 0.000515 |
Target: 5'- cCACGGCGCGGAGCCCACGCGCCGCCGc -3' miRNA: 3'- -GUGCCGCGCCUCGGGUGCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 20012 | 0.72 | 0.187192 |
Target: 5'- -cCGGCucgcgcagccgucacGCGGAGCagCCAgGCGCCGUCGg -3' miRNA: 3'- guGCCG---------------CGCCUCG--GGUgCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 18441 | 0.71 | 0.203648 |
Target: 5'- --aGGCGCGGuccGCguggcgcgcgaaUCGCGCGCCGCUGa -3' miRNA: 3'- gugCCGCGCCu--CG------------GGUGCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 46009 | 0.66 | 0.45932 |
Target: 5'- aGCaGGauCGGccGCCCACGCagcugGCCGCCGc -3' miRNA: 3'- gUG-CCgcGCCu-CGGGUGCG-----CGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 65791 | 0.75 | 0.103735 |
Target: 5'- gCGCGGCgucggcgcGCGGuGCCUGCGCGgCGCCa -3' miRNA: 3'- -GUGCCG--------CGCCuCGGGUGCGCgGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 102011 | 0.75 | 0.104766 |
Target: 5'- gGCGGCgGUGGAcugcagcgugccguuGaCCCAUGCGCCGCCa -3' miRNA: 3'- gUGCCG-CGCCU---------------C-GGGUGCGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 21556 | 0.74 | 0.123231 |
Target: 5'- -uCGGCGaCGGggcAGCCCGCGCGCUccgcggccaGCCGg -3' miRNA: 3'- guGCCGC-GCC---UCGGGUGCGCGG---------CGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 98617 | 0.74 | 0.129399 |
Target: 5'- aACGGCGCccggcGAGCCCGCGC-CCGCg- -3' miRNA: 3'- gUGCCGCGc----CUCGGGUGCGcGGCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 79331 | 0.73 | 0.153291 |
Target: 5'- gCGCGGCGCu--GCCuUugGCGCCGCUGu -3' miRNA: 3'- -GUGCCGCGccuCGG-GugCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 90030 | 0.72 | 0.181116 |
Target: 5'- -cUGGcCGCGGcGCCgGCGCGCgUGCCGg -3' miRNA: 3'- guGCC-GCGCCuCGGgUGCGCG-GCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 69363 | 0.73 | 0.164708 |
Target: 5'- aGCGGCGUGc-GCCCgcuGCGCGCCGUCc -3' miRNA: 3'- gUGCCGCGCcuCGGG---UGCGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 31151 | 0.73 | 0.148212 |
Target: 5'- aCGCGccgcGCGCGGAGUCggacagugugcuaACGCGCCGCUGg -3' miRNA: 3'- -GUGC----CGCGCCUCGGg------------UGCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 40371 | 0.79 | 0.053852 |
Target: 5'- -cCGGCGCcaggaaaucgguGGAcaugcgcGCCCACGCGCCGCCGc -3' miRNA: 3'- guGCCGCG------------CCU-------CGGGUGCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 79868 | 0.72 | 0.16868 |
Target: 5'- -gUGGCGCGuGGUCCACGCGCgCGCg- -3' miRNA: 3'- guGCCGCGCcUCGGGUGCGCG-GCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 33669 | 0.78 | 0.071321 |
Target: 5'- gGCGGCGUGGuaaaacaaacGGCCCGacgUGCGCCGCCc -3' miRNA: 3'- gUGCCGCGCC----------UCGGGU---GCGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 50493 | 0.74 | 0.13585 |
Target: 5'- gCGCGuGCGCGcGGCaCCAgCGCGCCGCgCGg -3' miRNA: 3'- -GUGC-CGCGCcUCG-GGU-GCGCGGCG-GC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 20766 | 0.72 | 0.181116 |
Target: 5'- uCACGGCGcCGGcgucGUCCACGUagaaGCCGUCGa -3' miRNA: 3'- -GUGCCGC-GCCu---CGGGUGCG----CGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 73792 | 0.72 | 0.193902 |
Target: 5'- gGCGGCgGCGGcuggaacGGCa-GCGCGCCGCCc -3' miRNA: 3'- gUGCCG-CGCC-------UCGggUGCGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 99054 | 0.76 | 0.0963 |
Target: 5'- -cCGGCGCGGcGCCCGCccaCGCCGCgCGa -3' miRNA: 3'- guGCCGCGCCuCGGGUGc--GCGGCG-GC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 51196 | 0.75 | 0.106331 |
Target: 5'- gACGGCGCGGu--UCugGCGCCGCCc -3' miRNA: 3'- gUGCCGCGCCucgGGugCGCGGCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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