Results 1 - 20 of 237 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6737 | 5' | -66.2 | NC_001875.2 | + | 118870 | 1.06 | 0.000515 |
Target: 5'- cCACGGCGCGGAGCCCACGCGCCGCCGc -3' miRNA: 3'- -GUGCCGCGCCUCGGGUGCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 98804 | 0.82 | 0.034961 |
Target: 5'- gCGCGGCGCGGcGCCCGcCGCGCUGCg- -3' miRNA: 3'- -GUGCCGCGCCuCGGGU-GCGCGGCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 31689 | 0.81 | 0.041833 |
Target: 5'- -cCGGCGUGGAccgccGCUUGCGCGCCGCCGg -3' miRNA: 3'- guGCCGCGCCU-----CGGGUGCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 74150 | 0.8 | 0.046336 |
Target: 5'- gAgGGCGCGGcGCCCGC-CGCCGCCa -3' miRNA: 3'- gUgCCGCGCCuCGGGUGcGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 40371 | 0.79 | 0.053852 |
Target: 5'- -cCGGCGCcaggaaaucgguGGAcaugcgcGCCCACGCGCCGCCGc -3' miRNA: 3'- guGCCGCG------------CCU-------CGGGUGCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 33669 | 0.78 | 0.071321 |
Target: 5'- gGCGGCGUGGuaaaacaaacGGCCCGacgUGCGCCGCCc -3' miRNA: 3'- gUGCCGCGCC----------UCGGGU---GCGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 99054 | 0.76 | 0.0963 |
Target: 5'- -cCGGCGCGGcGCCCGCccaCGCCGCgCGa -3' miRNA: 3'- guGCCGCGCCuCGGGUGc--GCGGCG-GC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 70203 | 0.75 | 0.106331 |
Target: 5'- gACGGCGaccacuGGGcGCCCGagGCGCCGCCGa -3' miRNA: 3'- gUGCCGCg-----CCU-CGGGUg-CGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 81343 | 0.75 | 0.117338 |
Target: 5'- gCGCGGCGCgcuGGuGCCgcgcgCACGCGCCgGCCGc -3' miRNA: 3'- -GUGCCGCG---CCuCGG-----GUGCGCGG-CGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 56447 | 0.75 | 0.120251 |
Target: 5'- aCACGGUgaggccggugGCGGGGUCCGCGCGCguguuggucagCGCCa -3' miRNA: 3'- -GUGCCG----------CGCCUCGGGUGCGCG-----------GCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 65791 | 0.75 | 0.103735 |
Target: 5'- gCGCGGCgucggcgcGCGGuGCCUGCGCGgCGCCa -3' miRNA: 3'- -GUGCCG--------CGCCuCGGGUGCGCgGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 51196 | 0.75 | 0.106331 |
Target: 5'- gACGGCGCGGu--UCugGCGCCGCCc -3' miRNA: 3'- gUGCCGCGCCucgGGugCGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 102011 | 0.75 | 0.104766 |
Target: 5'- gGCGGCgGUGGAcugcagcgugccguuGaCCCAUGCGCCGCCa -3' miRNA: 3'- gUGCCG-CGCCU---------------C-GGGUGCGCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 108566 | 0.74 | 0.12628 |
Target: 5'- uUACGGCGCGGcGGUgCugGCGCUGCg- -3' miRNA: 3'- -GUGCCGCGCC-UCGgGugCGCGGCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 124817 | 0.74 | 0.142596 |
Target: 5'- gGCGGCGCuaaaGGUCagaUACGCGCCGCCGg -3' miRNA: 3'- gUGCCGCGcc--UCGG---GUGCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 98617 | 0.74 | 0.129399 |
Target: 5'- aACGGCGCccggcGAGCCCGCGC-CCGCg- -3' miRNA: 3'- gUGCCGCGc----CUCGGGUGCGcGGCGgc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 21556 | 0.74 | 0.123231 |
Target: 5'- -uCGGCGaCGGggcAGCCCGCGCGCUccgcggccaGCCGg -3' miRNA: 3'- guGCCGC-GCC---UCGGGUGCGCGG---------CGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 88235 | 0.74 | 0.123231 |
Target: 5'- aACGGCGCa-AGCggCGCGCGCCGCCGc -3' miRNA: 3'- gUGCCGCGccUCGg-GUGCGCGGCGGC- -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 110273 | 0.74 | 0.142596 |
Target: 5'- gGCuGGcCGCGGAGCgCGCGgGCUGCCc -3' miRNA: 3'- gUG-CC-GCGCCUCGgGUGCgCGGCGGc -5' |
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6737 | 5' | -66.2 | NC_001875.2 | + | 49996 | 0.74 | 0.13585 |
Target: 5'- aCGCGGCGCuugucgcgguuGGGGCgCGCGUGgUCGCCGg -3' miRNA: 3'- -GUGCCGCG-----------CCUCGgGUGCGC-GGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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