miRNA display CGI


Results 41 - 60 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 58911 0.66 0.840201
Target:  5'- --cGCuACGAagcCGCgGACGCCAagagCCGCGa -3'
miRNA:   3'- ccaCG-UGCU---GCGgUUGCGGUa---GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 9303 0.66 0.840201
Target:  5'- uGUGCACugcGCGCCgGACGCaAUCgGCGa -3'
miRNA:   3'- cCACGUGc--UGCGG-UUGCGgUAGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 86114 0.66 0.840201
Target:  5'- cGGcuuCGCGugGaCGugGCCAUCgGCAg -3'
miRNA:   3'- -CCac-GUGCugCgGUugCGGUAGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 119009 0.66 0.840201
Target:  5'- -aUGCcCGACuaCGugGCCAaCCGCGc -3'
miRNA:   3'- ccACGuGCUGcgGUugCGGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 50142 0.66 0.840201
Target:  5'- cGGUGCGCGcgggugUGCUGAgGUCGuagaUCCGCAc -3'
miRNA:   3'- -CCACGUGCu-----GCGGUUgCGGU----AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 77260 0.66 0.840201
Target:  5'- uGG-GCGCGcCGCCGggcgaaGCGgCcgCCGCGg -3'
miRNA:   3'- -CCaCGUGCuGCGGU------UGCgGuaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 45445 0.66 0.840201
Target:  5'- -uUGCGCGucgaacucgGCGCuCGGCGCCcgcagCCGCGc -3'
miRNA:   3'- ccACGUGC---------UGCG-GUUGCGGua---GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 94000 0.66 0.839386
Target:  5'- uGGUGCGCGcgcagcgugucguACGUgAuCGCCA-CCGCc -3'
miRNA:   3'- -CCACGUGC-------------UGCGgUuGCGGUaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 108656 0.66 0.831969
Target:  5'- -cUGCAac-CGCCAACgGCCGUgcCCGCAg -3'
miRNA:   3'- ccACGUgcuGCGGUUG-CGGUA--GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 51544 0.66 0.831969
Target:  5'- --cGCugGcgaacACGCCGACGCgCuuGUCCGUAu -3'
miRNA:   3'- ccaCGugC-----UGCGGUUGCG-G--UAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 43605 0.66 0.831969
Target:  5'- cGGcgGCGCG-CGCCGcuuGCGCCGUUuuUGCc -3'
miRNA:   3'- -CCa-CGUGCuGCGGU---UGCGGUAG--GCGu -5'
6739 5' -57.1 NC_001875.2 + 34274 0.66 0.831969
Target:  5'- cGUGUcacACGGCGUCAACGCUuugUgGCAc -3'
miRNA:   3'- cCACG---UGCUGCGGUUGCGGua-GgCGU- -5'
6739 5' -57.1 NC_001875.2 + 34425 0.66 0.831969
Target:  5'- --gGCGCGuugcgcaaauucACGCCcaucAACGCCAUgCGCGc -3'
miRNA:   3'- ccaCGUGC------------UGCGG----UUGCGGUAgGCGU- -5'
6739 5' -57.1 NC_001875.2 + 63706 0.66 0.8303
Target:  5'- aGGUGCGCGugauUGCCu-CGCCGgaacuggacgcgCUGCAc -3'
miRNA:   3'- -CCACGUGCu---GCGGuuGCGGUa-----------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 56454 0.66 0.823555
Target:  5'- --cGC-CGACGCCAucgccgACGCCAUCaccaaCGCc -3'
miRNA:   3'- ccaCGuGCUGCGGU------UGCGGUAG-----GCGu -5'
6739 5' -57.1 NC_001875.2 + 41173 0.66 0.823555
Target:  5'- uGUGCGCaGCcCCAGCGCCAg-CGUAg -3'
miRNA:   3'- cCACGUGcUGcGGUUGCGGUagGCGU- -5'
6739 5' -57.1 NC_001875.2 + 37053 0.66 0.823555
Target:  5'- cGUGCACGcGCGCgGACGCgGcCaCGCu -3'
miRNA:   3'- cCACGUGC-UGCGgUUGCGgUaG-GCGu -5'
6739 5' -57.1 NC_001875.2 + 98743 0.66 0.823555
Target:  5'- uGGUGCgugcucagccGCGACGgCGcCGCCAUcaaagucuggagCCGCGc -3'
miRNA:   3'- -CCACG----------UGCUGCgGUuGCGGUA------------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 113084 0.66 0.823555
Target:  5'- uGGcGaCGCG-CGUCAGCGCCuuagCCGCc -3'
miRNA:   3'- -CCaC-GUGCuGCGGUUGCGGua--GGCGu -5'
6739 5' -57.1 NC_001875.2 + 56376 0.66 0.823555
Target:  5'- --cGC-CGACGCCAucgccgACGCCAUCaccaaCGCc -3'
miRNA:   3'- ccaCGuGCUGCGGU------UGCGGUAG-----GCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.