miRNA display CGI


Results 21 - 40 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 78040 0.66 0.856093
Target:  5'- cGGUGC-CGGCGUUGAUGUUcuuggCCGCGu -3'
miRNA:   3'- -CCACGuGCUGCGGUUGCGGua---GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 54939 0.66 0.856093
Target:  5'- --cGCugGGCGCCGccccuuugcGCGCgCGUuuGCc -3'
miRNA:   3'- ccaCGugCUGCGGU---------UGCG-GUAggCGu -5'
6739 5' -57.1 NC_001875.2 + 10668 0.66 0.856093
Target:  5'- cGGacUGCACuuGGCGCaGGCGCUG-CCGCAa -3'
miRNA:   3'- -CC--ACGUG--CUGCGgUUGCGGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 18158 0.66 0.856093
Target:  5'- uGGUGCgGCG-CGCgCGACGCCG-CCa-- -3'
miRNA:   3'- -CCACG-UGCuGCG-GUUGCGGUaGGcgu -5'
6739 5' -57.1 NC_001875.2 + 41715 0.66 0.848245
Target:  5'- -aUGCGCGGCGCUgcgcGGCGUCGcauUCCGa- -3'
miRNA:   3'- ccACGUGCUGCGG----UUGCGGU---AGGCgu -5'
6739 5' -57.1 NC_001875.2 + 54871 0.66 0.848245
Target:  5'- aGUGCAgcacguugcuccCGACGCgGAC-UCGUCCGCc -3'
miRNA:   3'- cCACGU------------GCUGCGgUUGcGGUAGGCGu -5'
6739 5' -57.1 NC_001875.2 + 18212 0.66 0.848245
Target:  5'- ---aCGCGGCGCCGuCGCCGcucuugccgCCGCGg -3'
miRNA:   3'- ccacGUGCUGCGGUuGCGGUa--------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 89789 0.66 0.848245
Target:  5'- cGUGCACGuGCGCgAACGCag--CGCGg -3'
miRNA:   3'- cCACGUGC-UGCGgUUGCGguagGCGU- -5'
6739 5' -57.1 NC_001875.2 + 10085 0.66 0.848245
Target:  5'- uGGaGCAaauCGACGCCGACa-UGUCCGCGc -3'
miRNA:   3'- -CCaCGU---GCUGCGGUUGcgGUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 93282 0.66 0.848245
Target:  5'- uGG-GCACGccGCGCCGACgcagcaacccgGCCAcgagCUGCAa -3'
miRNA:   3'- -CCaCGUGC--UGCGGUUG-----------CGGUa---GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 74130 0.66 0.848245
Target:  5'- cGGUGuCGCG-CGaCGACGCguUUCGCGu -3'
miRNA:   3'- -CCAC-GUGCuGCgGUUGCGguAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 126949 0.66 0.848245
Target:  5'- -uUGCAgGAUGCCGGCGacaCGagCGCAc -3'
miRNA:   3'- ccACGUgCUGCGGUUGCg--GUagGCGU- -5'
6739 5' -57.1 NC_001875.2 + 78502 0.66 0.848245
Target:  5'- cGGUGgACGACGgagaCAuUGUguUCCGCAg -3'
miRNA:   3'- -CCACgUGCUGCg---GUuGCGguAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 57744 0.66 0.848245
Target:  5'- --aGCACGGCGUCGcUGCCcaaCUGCAg -3'
miRNA:   3'- ccaCGUGCUGCGGUuGCGGua-GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 85858 0.66 0.848245
Target:  5'- uGUGCACGGCGaguuCGCCGcagcggcggcUCUGCGc -3'
miRNA:   3'- cCACGUGCUGCgguuGCGGU----------AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 34873 0.66 0.848245
Target:  5'- --cGCACGACGuCCAcaGCGUCGUCUu-- -3'
miRNA:   3'- ccaCGUGCUGC-GGU--UGCGGUAGGcgu -5'
6739 5' -57.1 NC_001875.2 + 82384 0.66 0.848245
Target:  5'- cGGaacCACGGCGCCGuccacCGUCAgCCGCGc -3'
miRNA:   3'- -CCac-GUGCUGCGGUu----GCGGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 87447 0.66 0.848245
Target:  5'- aGUGCGCGcGCGCCGACGUg--CC-CAa -3'
miRNA:   3'- cCACGUGC-UGCGGUUGCGguaGGcGU- -5'
6739 5' -57.1 NC_001875.2 + 76452 0.66 0.847449
Target:  5'- --aGCAUGACGUacaacgaCGGCGCCGgcaaaacggCCGCGg -3'
miRNA:   3'- ccaCGUGCUGCG-------GUUGCGGUa--------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 66055 0.66 0.845852
Target:  5'- --aGCugGcgcucaacgacgacGCGCCGcCGCCcgCCGCGc -3'
miRNA:   3'- ccaCGugC--------------UGCGGUuGCGGuaGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.