miRNA display CGI


Results 21 - 40 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 90788 0.66 0.863739
Target:  5'- cGUGCACGAccaCGCCGcucguaaaaACGCC-UCCa-- -3'
miRNA:   3'- cCACGUGCU---GCGGU---------UGCGGuAGGcgu -5'
6739 5' -57.1 NC_001875.2 + 42556 0.66 0.856093
Target:  5'- cGGUGguCG-CGCCcagccGCGCCAggUCgGCGc -3'
miRNA:   3'- -CCACguGCuGCGGu----UGCGGU--AGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 89305 0.66 0.856093
Target:  5'- --cGCAUGGCGCCGcCaCCAUgCGCu -3'
miRNA:   3'- ccaCGUGCUGCGGUuGcGGUAgGCGu -5'
6739 5' -57.1 NC_001875.2 + 126949 0.66 0.848245
Target:  5'- -uUGCAgGAUGCCGGCGacaCGagCGCAc -3'
miRNA:   3'- ccACGUgCUGCGGUUGCg--GUagGCGU- -5'
6739 5' -57.1 NC_001875.2 + 108656 0.66 0.831969
Target:  5'- -cUGCAac-CGCCAACgGCCGUgcCCGCAg -3'
miRNA:   3'- ccACGUgcuGCGGUUG-CGGUA--GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 51544 0.66 0.831969
Target:  5'- --cGCugGcgaacACGCCGACGCgCuuGUCCGUAu -3'
miRNA:   3'- ccaCGugC-----UGCGGUUGCG-G--UAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 56376 0.66 0.823555
Target:  5'- --cGC-CGACGCCAucgccgACGCCAUCaccaaCGCc -3'
miRNA:   3'- ccaCGuGCUGCGGU------UGCGGUAG-----GCGu -5'
6739 5' -57.1 NC_001875.2 + 98743 0.66 0.823555
Target:  5'- uGGUGCgugcucagccGCGACGgCGcCGCCAUcaaagucuggagCCGCGc -3'
miRNA:   3'- -CCACG----------UGCUGCgGUuGCGGUA------------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 5898 0.66 0.823555
Target:  5'- --aGCACGACGUguaCAACGCgCuuaaCCGCGg -3'
miRNA:   3'- ccaCGUGCUGCG---GUUGCG-Gua--GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 10085 0.66 0.848245
Target:  5'- uGGaGCAaauCGACGCCGACa-UGUCCGCGc -3'
miRNA:   3'- -CCaCGU---GCUGCGGUUGcgGUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 43605 0.66 0.831969
Target:  5'- cGGcgGCGCG-CGCCGcuuGCGCCGUUuuUGCc -3'
miRNA:   3'- -CCa-CGUGCuGCGGU---UGCGGUAG--GCGu -5'
6739 5' -57.1 NC_001875.2 + 89121 0.66 0.863739
Target:  5'- --cGCGCGACGaCCGgguGCGCCuUgCGUAc -3'
miRNA:   3'- ccaCGUGCUGC-GGU---UGCGGuAgGCGU- -5'
6739 5' -57.1 NC_001875.2 + 101193 0.66 0.823555
Target:  5'- cGUGC-CGGCGcCCAACuuGCCGUuuGUc -3'
miRNA:   3'- cCACGuGCUGC-GGUUG--CGGUAggCGu -5'
6739 5' -57.1 NC_001875.2 + 49861 0.66 0.863739
Target:  5'- cGGccgGCGCGccuUGCCGGCGCCAaCCa-- -3'
miRNA:   3'- -CCa--CGUGCu--GCGGUUGCGGUaGGcgu -5'
6739 5' -57.1 NC_001875.2 + 87901 0.66 0.859176
Target:  5'- cGUGuCACGuccACGCCucugcaggaauaccaGAUGCCA-CCGCAa -3'
miRNA:   3'- cCAC-GUGC---UGCGG---------------UUGCGGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 57742 0.66 0.863739
Target:  5'- --cGCGCGGCGCguagucgcgaAACGCC-UCCuGCAg -3'
miRNA:   3'- ccaCGUGCUGCGg---------UUGCGGuAGG-CGU- -5'
6739 5' -57.1 NC_001875.2 + 45507 0.66 0.823555
Target:  5'- aGUGCcuccACGGCaGCCAacGCGCCAaagCUGCu -3'
miRNA:   3'- cCACG----UGCUG-CGGU--UGCGGUa--GGCGu -5'
6739 5' -57.1 NC_001875.2 + 46702 0.66 0.822704
Target:  5'- aGGUGCGCGACGUggUGAUGaCCAugauauuUuuGCAg -3'
miRNA:   3'- -CCACGUGCUGCG--GUUGC-GGU-------AggCGU- -5'
6739 5' -57.1 NC_001875.2 + 56454 0.66 0.823555
Target:  5'- --cGC-CGACGCCAucgccgACGCCAUCaccaaCGCc -3'
miRNA:   3'- ccaCGuGCUGCGGU------UGCGGUAG-----GCGu -5'
6739 5' -57.1 NC_001875.2 + 5803 0.66 0.863739
Target:  5'- cGGcUGCGCauaagguaguaGACuGCCAGCGCCG-CCGa- -3'
miRNA:   3'- -CC-ACGUG-----------CUG-CGGUUGCGGUaGGCgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.