miRNA display CGI


Results 21 - 40 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 10085 0.66 0.848245
Target:  5'- uGGaGCAaauCGACGCCGACa-UGUCCGCGc -3'
miRNA:   3'- -CCaCGU---GCUGCGGUUGcgGUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 10127 0.71 0.539405
Target:  5'- --aGCugGugGCCAguucggGCGUguUCCGCAa -3'
miRNA:   3'- ccaCGugCugCGGU------UGCGguAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 10668 0.66 0.856093
Target:  5'- cGGacUGCACuuGGCGCaGGCGCUG-CCGCAa -3'
miRNA:   3'- -CC--ACGUG--CUGCGgUUGCGGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 10859 0.73 0.466189
Target:  5'- aGGUGgACGACGCgGugGCCGcgucgguggcgcugCCGCGc -3'
miRNA:   3'- -CCACgUGCUGCGgUugCGGUa-------------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 11200 0.72 0.4907
Target:  5'- uGGaGCACGACGCCG-CGCCGgacgagaaggCCGUc -3'
miRNA:   3'- -CCaCGUGCUGCGGUuGCGGUa---------GGCGu -5'
6739 5' -57.1 NC_001875.2 + 12312 0.67 0.769721
Target:  5'- cGUGUGCGugGUCAacGCGCCcggCCaGCGa -3'
miRNA:   3'- cCACGUGCugCGGU--UGCGGua-GG-CGU- -5'
6739 5' -57.1 NC_001875.2 + 12441 0.7 0.620205
Target:  5'- cGUGCGCGcCGCggugGACGCCAUUCaGCGg -3'
miRNA:   3'- cCACGUGCuGCGg---UUGCGGUAGG-CGU- -5'
6739 5' -57.1 NC_001875.2 + 13908 0.7 0.609999
Target:  5'- cGGcgGCGCGcACGCCGGCcugcagcuuGCCGUCUGUu -3'
miRNA:   3'- -CCa-CGUGC-UGCGGUUG---------CGGUAGGCGu -5'
6739 5' -57.1 NC_001875.2 + 16234 0.67 0.806216
Target:  5'- aGUGUgacuGCGGCGaCGAgGCCGUCaCGCGc -3'
miRNA:   3'- cCACG----UGCUGCgGUUgCGGUAG-GCGU- -5'
6739 5' -57.1 NC_001875.2 + 16276 0.68 0.750705
Target:  5'- uGGUGCcCGGCGaCCGcACGuCCAUgUGCGc -3'
miRNA:   3'- -CCACGuGCUGC-GGU-UGC-GGUAgGCGU- -5'
6739 5' -57.1 NC_001875.2 + 16860 0.66 0.823555
Target:  5'- cGUGUuaaucgGCGcCGCCAGCGCgA-CCGCu -3'
miRNA:   3'- cCACG------UGCuGCGGUUGCGgUaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 17169 0.69 0.715477
Target:  5'- --aGCACGGucgccgcugacgcacCGCCAaaaauagcacACGCCGUUCGCGa -3'
miRNA:   3'- ccaCGUGCU---------------GCGGU----------UGCGGUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 17956 0.66 0.863739
Target:  5'- uGUGCcCGGCaGCCAGCG-CGUCCcCAc -3'
miRNA:   3'- cCACGuGCUG-CGGUUGCgGUAGGcGU- -5'
6739 5' -57.1 NC_001875.2 + 18158 0.66 0.856093
Target:  5'- uGGUGCgGCG-CGCgCGACGCCG-CCa-- -3'
miRNA:   3'- -CCACG-UGCuGCG-GUUGCGGUaGGcgu -5'
6739 5' -57.1 NC_001875.2 + 18212 0.66 0.848245
Target:  5'- ---aCGCGGCGCCGuCGCCGcucuugccgCCGCGg -3'
miRNA:   3'- ccacGUGCUGCGGUuGCGGUa--------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 18425 0.68 0.721424
Target:  5'- -uUGCGuacuCGGCGCgaGGCGCgGUCCGCGu -3'
miRNA:   3'- ccACGU----GCUGCGg-UUGCGgUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 18691 0.68 0.731273
Target:  5'- cGGcGCGCG-CGCCGGCGUgcacauuaaCGUgCCGCAc -3'
miRNA:   3'- -CCaCGUGCuGCGGUUGCG---------GUA-GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 19122 0.71 0.549352
Target:  5'- --cGCGCGACGCgccuaccacggCGGCGCCGUCaGCGa -3'
miRNA:   3'- ccaCGUGCUGCG-----------GUUGCGGUAGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 19710 0.68 0.750705
Target:  5'- aGGUGUACG-CGCUGugGgCCGaggCCGUAa -3'
miRNA:   3'- -CCACGUGCuGCGGUugC-GGUa--GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 19870 0.75 0.367044
Target:  5'- cGU-CGCGGCGCgGGCGCCGUuuGCGa -3'
miRNA:   3'- cCAcGUGCUGCGgUUGCGGUAggCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.