miRNA display CGI


Results 21 - 40 of 288 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 19870 0.75 0.367044
Target:  5'- cGU-CGCGGCGCgGGCGCCGUuuGCGa -3'
miRNA:   3'- cCAcGUGCUGCGgUUGCGGUAggCGU- -5'
6739 5' -57.1 NC_001875.2 + 29262 0.74 0.391704
Target:  5'- gGGUGCGCGGcCGCCGaccGCGCCGgcggggCGCGg -3'
miRNA:   3'- -CCACGUGCU-GCGGU---UGCGGUag----GCGU- -5'
6739 5' -57.1 NC_001875.2 + 69629 0.74 0.400161
Target:  5'- uGGcGCGCGAgGUgGACGCCGUCgGCc -3'
miRNA:   3'- -CCaCGUGCUgCGgUUGCGGUAGgCGu -5'
6739 5' -57.1 NC_001875.2 + 128666 0.74 0.407871
Target:  5'- uGGUGCGCGGcCGCCGGCucaccuacucgccGCCcgacgccgcGUCCGCGc -3'
miRNA:   3'- -CCACGUGCU-GCGGUUG-------------CGG---------UAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 56262 0.74 0.408734
Target:  5'- --cGC-CGACGCCGACGCCAg-CGCu -3'
miRNA:   3'- ccaCGuGCUGCGGUUGCGGUagGCGu -5'
6739 5' -57.1 NC_001875.2 + 95237 0.74 0.408734
Target:  5'- uGGUGCaaggGCGACGCgCAGCGgCugcgCCGCAu -3'
miRNA:   3'- -CCACG----UGCUGCG-GUUGCgGua--GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 8480 0.74 0.426217
Target:  5'- --cGCGCGgaaacaccACGCCgGGCGCCGUCCGUg -3'
miRNA:   3'- ccaCGUGC--------UGCGG-UUGCGGUAGGCGu -5'
6739 5' -57.1 NC_001875.2 + 92767 0.73 0.435124
Target:  5'- --aGCACGACGCCgcggcgcacaAugGCCAUgCGCu -3'
miRNA:   3'- ccaCGUGCUGCGG----------UugCGGUAgGCGu -5'
6739 5' -57.1 NC_001875.2 + 62721 0.73 0.435124
Target:  5'- -cUGCGCGuCGCCAAUGUCggCCGUAa -3'
miRNA:   3'- ccACGUGCuGCGGUUGCGGuaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 95307 0.73 0.444138
Target:  5'- cGGUGC---GCGCCAGCGCCGUuuGgCGa -3'
miRNA:   3'- -CCACGugcUGCGGUUGCGGUAggC-GU- -5'
6739 5' -57.1 NC_001875.2 + 111798 0.73 0.444138
Target:  5'- cGGUGCACG-CgGCCGacgGCGCCuggcugcUCCGCGu -3'
miRNA:   3'- -CCACGUGCuG-CGGU---UGCGGu------AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 37579 0.73 0.444138
Target:  5'- uGGaUGCGcCGGCGCgAGCGCCGcggccggCCGCAc -3'
miRNA:   3'- -CC-ACGU-GCUGCGgUUGCGGUa------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 74151 0.73 0.444138
Target:  5'- aGG-GCGCGGCGCC--CGCCG-CCGCc -3'
miRNA:   3'- -CCaCGUGCUGCGGuuGCGGUaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 125919 0.73 0.453256
Target:  5'- -cUGCGCGGCGCUAcccaACGCCAUgCCGg- -3'
miRNA:   3'- ccACGUGCUGCGGU----UGCGGUA-GGCgu -5'
6739 5' -57.1 NC_001875.2 + 74270 0.73 0.453256
Target:  5'- --aGCGCGACGCC-GCGCCGguuuaCGCGc -3'
miRNA:   3'- ccaCGUGCUGCGGuUGCGGUag---GCGU- -5'
6739 5' -57.1 NC_001875.2 + 80812 0.73 0.462474
Target:  5'- -uUGCACGugGCUguGGCGCCGUUgGCc -3'
miRNA:   3'- ccACGUGCugCGG--UUGCGGUAGgCGu -5'
6739 5' -57.1 NC_001875.2 + 9795 0.73 0.462474
Target:  5'- gGGUGUACu-UGCaCGGCGCCAUCgGCGg -3'
miRNA:   3'- -CCACGUGcuGCG-GUUGCGGUAGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 10859 0.73 0.466189
Target:  5'- aGGUGgACGACGCgGugGCCGcgucgguggcgcugCCGCGc -3'
miRNA:   3'- -CCACgUGCUGCGgUugCGGUa-------------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 84370 0.73 0.47179
Target:  5'- aGGUGCGCGGCcuGCCGggGCGgCGUCgGUAg -3'
miRNA:   3'- -CCACGUGCUG--CGGU--UGCgGUAGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 22952 0.73 0.47179
Target:  5'- --cGgGCGGCGCCAuguACGCC-UCCGCc -3'
miRNA:   3'- ccaCgUGCUGCGGU---UGCGGuAGGCGu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.