miRNA display CGI


Results 1 - 20 of 288 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 116900 1.1 0.001672
Target:  5'- aGGUGCACGACGCCAACGCCAUCCGCAc -3'
miRNA:   3'- -CCACGUGCUGCGGUUGCGGUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 69198 0.82 0.143431
Target:  5'- cGUGCGCGGCGCCGACGgCCAguaCGCu -3'
miRNA:   3'- cCACGUGCUGCGGUUGC-GGUag-GCGu -5'
6739 5' -57.1 NC_001875.2 + 97904 0.81 0.158873
Target:  5'- cGG-GCGuCGGCGCCGACGCCcgCUGCGu -3'
miRNA:   3'- -CCaCGU-GCUGCGGUUGCGGuaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 88511 0.78 0.225269
Target:  5'- uGGUGCGCGGCGgCAaccACGCCGacCCGCGc -3'
miRNA:   3'- -CCACGUGCUGCgGU---UGCGGUa-GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 27476 0.78 0.230818
Target:  5'- gGGUGCGCGACGCUuuaGGCGCUA-CUGCu -3'
miRNA:   3'- -CCACGUGCUGCGG---UUGCGGUaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 21965 0.78 0.230818
Target:  5'- gGGaUGgGCGGCGCCAGCGCCAgcUUgGCAa -3'
miRNA:   3'- -CC-ACgUGCUGCGGUUGCGGU--AGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 37114 0.78 0.241678
Target:  5'- cGG-GCGCGGCGCC-GCGCCGgcguuugcgucuuUCCGCGu -3'
miRNA:   3'- -CCaCGUGCUGCGGuUGCGGU-------------AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 57935 0.78 0.248159
Target:  5'- aGGUGUugGACcCCGACGCCAUgCCGg- -3'
miRNA:   3'- -CCACGugCUGcGGUUGCGGUA-GGCgu -5'
6739 5' -57.1 NC_001875.2 + 49459 0.78 0.254174
Target:  5'- cGGUGgACGGCGCCGugGU--UCCGCGc -3'
miRNA:   3'- -CCACgUGCUGCGGUugCGguAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 63282 0.77 0.266564
Target:  5'- cGGUGCGCGAcCGCCGcCGCCGcggCgGCAa -3'
miRNA:   3'- -CCACGUGCU-GCGGUuGCGGUa--GgCGU- -5'
6739 5' -57.1 NC_001875.2 + 20760 0.76 0.306657
Target:  5'- aGGUuuuCACGGCGCCGGCGUCGUCCa-- -3'
miRNA:   3'- -CCAc--GUGCUGCGGUUGCGGUAGGcgu -5'
6739 5' -57.1 NC_001875.2 + 81436 0.76 0.306657
Target:  5'- --aGCugGcCGUCuGCGCCGUCCGCAa -3'
miRNA:   3'- ccaCGugCuGCGGuUGCGGUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 91624 0.76 0.306657
Target:  5'- --cGCGCGuuuCGCCGGCGCCAauuUCCGUg -3'
miRNA:   3'- ccaCGUGCu--GCGGUUGCGGU---AGGCGu -5'
6739 5' -57.1 NC_001875.2 + 56166 0.76 0.313772
Target:  5'- --cGC-CGACGCCAACGCCAU-CGCc -3'
miRNA:   3'- ccaCGuGCUGCGGUUGCGGUAgGCGu -5'
6739 5' -57.1 NC_001875.2 + 56190 0.76 0.313772
Target:  5'- --cGC-CGACGCCAACGCCAU-CGCc -3'
miRNA:   3'- ccaCGuGCUGCGGUUGCGGUAgGCGu -5'
6739 5' -57.1 NC_001875.2 + 98803 0.76 0.313772
Target:  5'- --cGCGCGGCG-CGGCGCCcgCCGCGc -3'
miRNA:   3'- ccaCGUGCUGCgGUUGCGGuaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 111077 0.76 0.335861
Target:  5'- cGUGgACGACGCCGGCGCCGUgaaaaccuuuugUUGCGg -3'
miRNA:   3'- cCACgUGCUGCGGUUGCGGUA------------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 97664 0.76 0.338891
Target:  5'- -aUGCGCGACGCCGacggcaacgaacaaaGCGCCAccaUUCGCGc -3'
miRNA:   3'- ccACGUGCUGCGGU---------------UGCGGU---AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 123338 0.75 0.365438
Target:  5'- aGUGCGCGGCGCCcacacggacGGCGCCcggcgugguguuUCCGCGc -3'
miRNA:   3'- cCACGUGCUGCGG---------UUGCGGu-----------AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 19870 0.75 0.367044
Target:  5'- cGU-CGCGGCGCgGGCGCCGUuuGCGa -3'
miRNA:   3'- cCAcGUGCUGCGgUUGCGGUAggCGU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.