miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 9303 0.66 0.840201
Target:  5'- uGUGCACugcGCGCCgGACGCaAUCgGCGa -3'
miRNA:   3'- cCACGUGc--UGCGG-UUGCGgUAGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 18158 0.66 0.856093
Target:  5'- uGGUGCgGCG-CGCgCGACGCCG-CCa-- -3'
miRNA:   3'- -CCACG-UGCuGCG-GUUGCGGUaGGcgu -5'
6739 5' -57.1 NC_001875.2 + 113084 0.66 0.823555
Target:  5'- uGGcGaCGCG-CGUCAGCGCCuuagCCGCc -3'
miRNA:   3'- -CCaC-GUGCuGCGGUUGCGGua--GGCGu -5'
6739 5' -57.1 NC_001875.2 + 98743 0.66 0.823555
Target:  5'- uGGUGCgugcucagccGCGACGgCGcCGCCAUcaaagucuggagCCGCGc -3'
miRNA:   3'- -CCACG----------UGCUGCgGUuGCGGUA------------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 78040 0.66 0.856093
Target:  5'- cGGUGC-CGGCGUUGAUGUUcuuggCCGCGu -3'
miRNA:   3'- -CCACGuGCUGCGGUUGCGGua---GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 85858 0.66 0.848245
Target:  5'- uGUGCACGGCGaguuCGCCGcagcggcggcUCUGCGc -3'
miRNA:   3'- cCACGUGCUGCgguuGCGGU----------AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 45445 0.66 0.840201
Target:  5'- -uUGCGCGucgaacucgGCGCuCGGCGCCcgcagCCGCGc -3'
miRNA:   3'- ccACGUGC---------UGCG-GUUGCGGua---GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 41715 0.66 0.848245
Target:  5'- -aUGCGCGGCGCUgcgcGGCGUCGcauUCCGa- -3'
miRNA:   3'- ccACGUGCUGCGG----UUGCGGU---AGGCgu -5'
6739 5' -57.1 NC_001875.2 + 54939 0.66 0.856093
Target:  5'- --cGCugGGCGCCGccccuuugcGCGCgCGUuuGCc -3'
miRNA:   3'- ccaCGugCUGCGGU---------UGCG-GUAggCGu -5'
6739 5' -57.1 NC_001875.2 + 37053 0.66 0.823555
Target:  5'- cGUGCACGcGCGCgGACGCgGcCaCGCu -3'
miRNA:   3'- cCACGUGC-UGCGgUUGCGgUaG-GCGu -5'
6739 5' -57.1 NC_001875.2 + 41173 0.66 0.823555
Target:  5'- uGUGCGCaGCcCCAGCGCCAg-CGUAg -3'
miRNA:   3'- cCACGUGcUGcGGUUGCGGUagGCGU- -5'
6739 5' -57.1 NC_001875.2 + 42556 0.66 0.856093
Target:  5'- cGGUGguCG-CGCCcagccGCGCCAggUCgGCGc -3'
miRNA:   3'- -CCACguGCuGCGGu----UGCGGU--AGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 58911 0.66 0.840201
Target:  5'- --cGCuACGAagcCGCgGACGCCAagagCCGCGa -3'
miRNA:   3'- ccaCG-UGCU---GCGgUUGCGGUa---GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 108656 0.66 0.831969
Target:  5'- -cUGCAac-CGCCAACgGCCGUgcCCGCAg -3'
miRNA:   3'- ccACGUgcuGCGGUUG-CGGUA--GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 51544 0.66 0.831969
Target:  5'- --cGCugGcgaacACGCCGACGCgCuuGUCCGUAu -3'
miRNA:   3'- ccaCGugC-----UGCGGUUGCG-G--UAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 16860 0.66 0.823555
Target:  5'- cGUGUuaaucgGCGcCGCCAGCGCgA-CCGCu -3'
miRNA:   3'- cCACG------UGCuGCGGUUGCGgUaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 10668 0.66 0.856093
Target:  5'- cGGacUGCACuuGGCGCaGGCGCUG-CCGCAa -3'
miRNA:   3'- -CC--ACGUG--CUGCGgUUGCGGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 10085 0.66 0.848245
Target:  5'- uGGaGCAaauCGACGCCGACa-UGUCCGCGc -3'
miRNA:   3'- -CCaCGU---GCUGCGGUUGcgGUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 34425 0.66 0.831969
Target:  5'- --gGCGCGuugcgcaaauucACGCCcaucAACGCCAUgCGCGc -3'
miRNA:   3'- ccaCGUGC------------UGCGG----UUGCGGUAgGCGU- -5'
6739 5' -57.1 NC_001875.2 + 126949 0.66 0.848245
Target:  5'- -uUGCAgGAUGCCGGCGacaCGagCGCAc -3'
miRNA:   3'- ccACGUgCUGCGGUUGCg--GUagGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.