miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 9795 0.73 0.462474
Target:  5'- gGGUGUACu-UGCaCGGCGCCAUCgGCGg -3'
miRNA:   3'- -CCACGUGcuGCG-GUUGCGGUAGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 128666 0.74 0.407871
Target:  5'- uGGUGCGCGGcCGCCGGCucaccuacucgccGCCcgacgccgcGUCCGCGc -3'
miRNA:   3'- -CCACGUGCU-GCGGUUG-------------CGG---------UAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 8480 0.74 0.426217
Target:  5'- --cGCGCGgaaacaccACGCCgGGCGCCGUCCGUg -3'
miRNA:   3'- ccaCGUGC--------UGCGG-UUGCGGUAGGCGu -5'
6739 5' -57.1 NC_001875.2 + 95307 0.73 0.444138
Target:  5'- cGGUGC---GCGCCAGCGCCGUuuGgCGa -3'
miRNA:   3'- -CCACGugcUGCGGUUGCGGUAggC-GU- -5'
6739 5' -57.1 NC_001875.2 + 37579 0.73 0.444138
Target:  5'- uGGaUGCGcCGGCGCgAGCGCCGcggccggCCGCAc -3'
miRNA:   3'- -CC-ACGU-GCUGCGgUUGCGGUa------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 111798 0.73 0.444138
Target:  5'- cGGUGCACG-CgGCCGacgGCGCCuggcugcUCCGCGu -3'
miRNA:   3'- -CCACGUGCuG-CGGU---UGCGGu------AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 74151 0.73 0.444138
Target:  5'- aGG-GCGCGGCGCC--CGCCG-CCGCc -3'
miRNA:   3'- -CCaCGUGCUGCGGuuGCGGUaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 74270 0.73 0.453256
Target:  5'- --aGCGCGACGCC-GCGCCGguuuaCGCGc -3'
miRNA:   3'- ccaCGUGCUGCGGuUGCGGUag---GCGU- -5'
6739 5' -57.1 NC_001875.2 + 80812 0.73 0.462474
Target:  5'- -uUGCACGugGCUguGGCGCCGUUgGCc -3'
miRNA:   3'- ccACGUGCugCGG--UUGCGGUAGgCGu -5'
6739 5' -57.1 NC_001875.2 + 69629 0.74 0.400161
Target:  5'- uGGcGCGCGAgGUgGACGCCGUCgGCc -3'
miRNA:   3'- -CCaCGUGCUgCGgUUGCGGUAGgCGu -5'
6739 5' -57.1 NC_001875.2 + 29262 0.74 0.391704
Target:  5'- gGGUGCGCGGcCGCCGaccGCGCCGgcggggCGCGg -3'
miRNA:   3'- -CCACGUGCU-GCGGU---UGCGGUag----GCGU- -5'
6739 5' -57.1 NC_001875.2 + 97664 0.76 0.338891
Target:  5'- -aUGCGCGACGCCGacggcaacgaacaaaGCGCCAccaUUCGCGc -3'
miRNA:   3'- ccACGUGCUGCGGU---------------UGCGGU---AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 97904 0.81 0.158873
Target:  5'- cGG-GCGuCGGCGCCGACGCCcgCUGCGu -3'
miRNA:   3'- -CCaCGU-GCUGCGGUUGCGGuaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 27476 0.78 0.230818
Target:  5'- gGGUGCGCGACGCUuuaGGCGCUA-CUGCu -3'
miRNA:   3'- -CCACGUGCUGCGG---UUGCGGUaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 37114 0.78 0.241678
Target:  5'- cGG-GCGCGGCGCC-GCGCCGgcguuugcgucuuUCCGCGu -3'
miRNA:   3'- -CCaCGUGCUGCGGuUGCGGU-------------AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 57935 0.78 0.248159
Target:  5'- aGGUGUugGACcCCGACGCCAUgCCGg- -3'
miRNA:   3'- -CCACGugCUGcGGUUGCGGUA-GGCgu -5'
6739 5' -57.1 NC_001875.2 + 49459 0.78 0.254174
Target:  5'- cGGUGgACGGCGCCGugGU--UCCGCGc -3'
miRNA:   3'- -CCACgUGCUGCGGUugCGguAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 91624 0.76 0.306657
Target:  5'- --cGCGCGuuuCGCCGGCGCCAauuUCCGUg -3'
miRNA:   3'- ccaCGUGCu--GCGGUUGCGGU---AGGCGu -5'
6739 5' -57.1 NC_001875.2 + 98803 0.76 0.313772
Target:  5'- --cGCGCGGCG-CGGCGCCcgCCGCGc -3'
miRNA:   3'- ccaCGUGCUGCgGUUGCGGuaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 111077 0.76 0.335861
Target:  5'- cGUGgACGACGCCGGCGCCGUgaaaaccuuuugUUGCGg -3'
miRNA:   3'- cCACgUGCUGCGGUUGCGGUA------------GGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.