miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 116900 1.1 0.001672
Target:  5'- aGGUGCACGACGCCAACGCCAUCCGCAc -3'
miRNA:   3'- -CCACGUGCUGCGGUUGCGGUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 98939 0.73 0.47179
Target:  5'- cGUGCGCGACGCgCGcguguucaGCCGUuuGCAg -3'
miRNA:   3'- cCACGUGCUGCG-GUug------CGGUAggCGU- -5'
6739 5' -57.1 NC_001875.2 + 33939 0.72 0.4907
Target:  5'- cGG-GCGuCGGCGCCGACGC---CCGCAa -3'
miRNA:   3'- -CCaCGU-GCUGCGGUUGCGguaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 89121 0.66 0.863739
Target:  5'- --cGCGCGACGaCCGgguGCGCCuUgCGUAc -3'
miRNA:   3'- ccaCGUGCUGC-GGU---UGCGGuAgGCGU- -5'
6739 5' -57.1 NC_001875.2 + 81436 0.76 0.306657
Target:  5'- --aGCugGcCGUCuGCGCCGUCCGCAa -3'
miRNA:   3'- ccaCGugCuGCGGuUGCGGUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 20760 0.76 0.306657
Target:  5'- aGGUuuuCACGGCGCCGGCGUCGUCCa-- -3'
miRNA:   3'- -CCAc--GUGCUGCGGUUGCGGUAGGcgu -5'
6739 5' -57.1 NC_001875.2 + 56190 0.76 0.313772
Target:  5'- --cGC-CGACGCCAACGCCAU-CGCc -3'
miRNA:   3'- ccaCGuGCUGCGGUUGCGGUAgGCGu -5'
6739 5' -57.1 NC_001875.2 + 123338 0.75 0.365438
Target:  5'- aGUGCGCGGCGCCcacacggacGGCGCCcggcgugguguuUCCGCGc -3'
miRNA:   3'- cCACGUGCUGCGG---------UUGCGGu-----------AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 95237 0.74 0.408734
Target:  5'- uGGUGCaaggGCGACGCgCAGCGgCugcgCCGCAu -3'
miRNA:   3'- -CCACG----UGCUGCG-GUUGCgGua--GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 2293 0.73 0.47179
Target:  5'- -aUGCGCGcGCGCCGugGCCG-CgCGCAg -3'
miRNA:   3'- ccACGUGC-UGCGGUugCGGUaG-GCGU- -5'
6739 5' -57.1 NC_001875.2 + 92767 0.73 0.435124
Target:  5'- --aGCACGACGCCgcggcgcacaAugGCCAUgCGCu -3'
miRNA:   3'- ccaCGUGCUGCGG----------UugCGGUAgGCGu -5'
6739 5' -57.1 NC_001875.2 + 21840 0.75 0.367044
Target:  5'- -cUGCGCGcGCGUCAACGCCAccgaCCGCGc -3'
miRNA:   3'- ccACGUGC-UGCGGUUGCGGUa---GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 88511 0.78 0.225269
Target:  5'- uGGUGCGCGGCGgCAaccACGCCGacCCGCGc -3'
miRNA:   3'- -CCACGUGCUGCgGU---UGCGGUa-GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 62721 0.73 0.435124
Target:  5'- -cUGCGCGuCGCCAAUGUCggCCGUAa -3'
miRNA:   3'- ccACGUGCuGCGGUUGCGGuaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 21965 0.78 0.230818
Target:  5'- gGGaUGgGCGGCGCCAGCGCCAgcUUgGCAa -3'
miRNA:   3'- -CC-ACgUGCUGCGGUUGCGGU--AGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 19870 0.75 0.367044
Target:  5'- cGU-CGCGGCGCgGGCGCCGUuuGCGa -3'
miRNA:   3'- cCAcGUGCUGCGgUUGCGGUAggCGU- -5'
6739 5' -57.1 NC_001875.2 + 125919 0.73 0.453256
Target:  5'- -cUGCGCGGCGCUAcccaACGCCAUgCCGg- -3'
miRNA:   3'- ccACGUGCUGCGGU----UGCGGUA-GGCgu -5'
6739 5' -57.1 NC_001875.2 + 87842 0.73 0.4812
Target:  5'- uGG-GCACGGCGCCcgucGgGCUGUCCGUg -3'
miRNA:   3'- -CCaCGUGCUGCGGu---UgCGGUAGGCGu -5'
6739 5' -57.1 NC_001875.2 + 63282 0.77 0.266564
Target:  5'- cGGUGCGCGAcCGCCGcCGCCGcggCgGCAa -3'
miRNA:   3'- -CCACGUGCU-GCGGUuGCGGUa--GgCGU- -5'
6739 5' -57.1 NC_001875.2 + 56166 0.76 0.313772
Target:  5'- --cGC-CGACGCCAACGCCAU-CGCc -3'
miRNA:   3'- ccaCGuGCUGCGGUUGCGGUAgGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.