miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 434 0.72 0.519701
Target:  5'- -uUGCAUGucCGCCAAUGUgGUCUGCAg -3'
miRNA:   3'- ccACGUGCu-GCGGUUGCGgUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 1229 0.67 0.788249
Target:  5'- cGUGCAgGAUcCCGACGCCcggCGCAa -3'
miRNA:   3'- cCACGUgCUGcGGUUGCGGuagGCGU- -5'
6739 5' -57.1 NC_001875.2 + 1723 0.7 0.640637
Target:  5'- cGG-GCGCGACaCCGgucGCGCCG-CCGCc -3'
miRNA:   3'- -CCaCGUGCUGcGGU---UGCGGUaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 1782 0.67 0.779051
Target:  5'- --aGCAUGcCGCCGcCGCCG-CCGCc -3'
miRNA:   3'- ccaCGUGCuGCGGUuGCGGUaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 1869 0.67 0.779051
Target:  5'- --aGCAUGcCGCCGcCGCCG-CCGCc -3'
miRNA:   3'- ccaCGUGCuGCGGUuGCGGUaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 2293 0.73 0.47179
Target:  5'- -aUGCGCGcGCGCCGugGCCG-CgCGCAg -3'
miRNA:   3'- ccACGUGC-UGCGGUugCGGUaG-GCGU- -5'
6739 5' -57.1 NC_001875.2 + 2865 0.69 0.691455
Target:  5'- gGGUGgGCGA-GC--GCGUCAUCCGCu -3'
miRNA:   3'- -CCACgUGCUgCGguUGCGGUAGGCGu -5'
6739 5' -57.1 NC_001875.2 + 3014 0.69 0.691455
Target:  5'- aGUGCGCGuCGCCGugcaaguuguacACGCCGUUgGgCAg -3'
miRNA:   3'- cCACGUGCuGCGGU------------UGCGGUAGgC-GU- -5'
6739 5' -57.1 NC_001875.2 + 3095 0.69 0.661043
Target:  5'- cGUGCACG-CGCCGggGCGCgGcUCGCGg -3'
miRNA:   3'- cCACGUGCuGCGGU--UGCGgUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 3833 0.7 0.599809
Target:  5'- --gGCGC-ACGCCGGCGCgG-CCGCAg -3'
miRNA:   3'- ccaCGUGcUGCGGUUGCGgUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 4452 0.68 0.750705
Target:  5'- --aGCACuuugGCCAggcucugaGCGCCGUCCGCGc -3'
miRNA:   3'- ccaCGUGcug-CGGU--------UGCGGUAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 5187 0.67 0.788249
Target:  5'- cGUGCAUGGCgGUCAACGuCCAgguuuaCGCGc -3'
miRNA:   3'- cCACGUGCUG-CGGUUGC-GGUag----GCGU- -5'
6739 5' -57.1 NC_001875.2 + 5512 0.68 0.741036
Target:  5'- cGGcGCACGcGCGCaguuuACGCCggCCGCc -3'
miRNA:   3'- -CCaCGUGC-UGCGgu---UGCGGuaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 5803 0.66 0.863739
Target:  5'- cGGcUGCGCauaagguaguaGACuGCCAGCGCCG-CCGa- -3'
miRNA:   3'- -CC-ACGUG-----------CUG-CGGUUGCGGUaGGCgu -5'
6739 5' -57.1 NC_001875.2 + 5898 0.66 0.823555
Target:  5'- --aGCACGACGUguaCAACGCgCuuaaCCGCGg -3'
miRNA:   3'- ccaCGUGCUGCG---GUUGCG-Gua--GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 6464 0.69 0.678317
Target:  5'- cGGUGUucgucaggucgauuACGGCGcCCAACGCgGagugCCGCGc -3'
miRNA:   3'- -CCACG--------------UGCUGC-GGUUGCGgUa---GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 8480 0.74 0.426217
Target:  5'- --cGCGCGgaaacaccACGCCgGGCGCCGUCCGUg -3'
miRNA:   3'- ccaCGUGC--------UGCGG-UUGCGGUAGGCGu -5'
6739 5' -57.1 NC_001875.2 + 9303 0.66 0.840201
Target:  5'- uGUGCACugcGCGCCgGACGCaAUCgGCGa -3'
miRNA:   3'- cCACGUGc--UGCGG-UUGCGgUAGgCGU- -5'
6739 5' -57.1 NC_001875.2 + 9637 0.7 0.609999
Target:  5'- cGUGCGCG-CGCCGuGCGUguUUCGCGa -3'
miRNA:   3'- cCACGUGCuGCGGU-UGCGguAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 9795 0.73 0.462474
Target:  5'- gGGUGUACu-UGCaCGGCGCCAUCgGCGg -3'
miRNA:   3'- -CCACGUGcuGCG-GUUGCGGUAGgCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.