miRNA display CGI


Results 1 - 20 of 288 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6739 5' -57.1 NC_001875.2 + 131552 0.67 0.782746
Target:  5'- aGGUGCugGACcugGCCAgcaugcggcgACGCCAgcaauacaacgaccCCGCc -3'
miRNA:   3'- -CCACGugCUG---CGGU----------UGCGGUa-------------GGCGu -5'
6739 5' -57.1 NC_001875.2 + 131520 0.68 0.750705
Target:  5'- cGGUGCagcggcuggaaGCGGCGCaaagcGCGCCcguGUCCGUc -3'
miRNA:   3'- -CCACG-----------UGCUGCGgu---UGCGG---UAGGCGu -5'
6739 5' -57.1 NC_001875.2 + 129433 0.7 0.598791
Target:  5'- cGGUGCGCGACaGUCAG-GCCAUUaagaggcacugggCGCAg -3'
miRNA:   3'- -CCACGUGCUG-CGGUUgCGGUAG-------------GCGU- -5'
6739 5' -57.1 NC_001875.2 + 128771 0.67 0.769721
Target:  5'- cGUGgGCGACcCCGGCGCgCcgCUGCGc -3'
miRNA:   3'- cCACgUGCUGcGGUUGCG-GuaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 128666 0.74 0.407871
Target:  5'- uGGUGCGCGGcCGCCGGCucaccuacucgccGCCcgacgccgcGUCCGCGc -3'
miRNA:   3'- -CCACGUGCU-GCGGUUG-------------CGG---------UAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 128412 0.67 0.797307
Target:  5'- --gGUGCGACGaCCAGCGCUcuugggacCCGCAc -3'
miRNA:   3'- ccaCGUGCUGC-GGUUGCGGua------GGCGU- -5'
6739 5' -57.1 NC_001875.2 + 128401 0.69 0.701506
Target:  5'- cGUGaCAgGACGCCAGCuuccuguguuGCUAaCCGCAg -3'
miRNA:   3'- cCAC-GUgCUGCGGUUG----------CGGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 128300 0.67 0.768781
Target:  5'- --cGcCACGGCGCCGgugacguGCGCCAaaUgCGCAa -3'
miRNA:   3'- ccaC-GUGCUGCGGU-------UGCGGU--AgGCGU- -5'
6739 5' -57.1 NC_001875.2 + 127213 0.71 0.559356
Target:  5'- gGGUGUGCuGACGCUuuCGCCGUacaCCGUg -3'
miRNA:   3'- -CCACGUG-CUGCGGuuGCGGUA---GGCGu -5'
6739 5' -57.1 NC_001875.2 + 126986 0.72 0.519701
Target:  5'- cGUGCACGA-GCUGugcACGCguUCCGCAa -3'
miRNA:   3'- cCACGUGCUgCGGU---UGCGguAGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 126949 0.66 0.848245
Target:  5'- -uUGCAgGAUGCCGGCGacaCGagCGCAc -3'
miRNA:   3'- ccACGUgCUGCGGUUGCg--GUagGCGU- -5'
6739 5' -57.1 NC_001875.2 + 125919 0.73 0.453256
Target:  5'- -cUGCGCGGCGCUAcccaACGCCAUgCCGg- -3'
miRNA:   3'- ccACGUGCUGCGGU----UGCGGUA-GGCgu -5'
6739 5' -57.1 NC_001875.2 + 125332 0.71 0.559356
Target:  5'- cGGUGgACGGCgGCCAGCGUguuggcgcggCAcUCCGCGu -3'
miRNA:   3'- -CCACgUGCUG-CGGUUGCG----------GU-AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 124509 0.66 0.856093
Target:  5'- aGGUGCAUGuACGUCAacACGCaaaAUuuGUg -3'
miRNA:   3'- -CCACGUGC-UGCGGU--UGCGg--UAggCGu -5'
6739 5' -57.1 NC_001875.2 + 124345 0.69 0.681355
Target:  5'- --aGCACGGCGCCGAUcaGCCAaaugagCgGCAu -3'
miRNA:   3'- ccaCGUGCUGCGGUUG--CGGUa-----GgCGU- -5'
6739 5' -57.1 NC_001875.2 + 124266 0.67 0.769721
Target:  5'- aGGcgGCGCGuugguCGUCGACGaCCcgCCGCc -3'
miRNA:   3'- -CCa-CGUGCu----GCGGUUGC-GGuaGGCGu -5'
6739 5' -57.1 NC_001875.2 + 123338 0.75 0.365438
Target:  5'- aGUGCGCGGCGCCcacacggacGGCGCCcggcgugguguuUCCGCGc -3'
miRNA:   3'- cCACGUGCUGCGG---------UUGCGGu-----------AGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 122250 0.68 0.721424
Target:  5'- -uUGCACG-CGCCcacCGCUAaCCGCAg -3'
miRNA:   3'- ccACGUGCuGCGGuu-GCGGUaGGCGU- -5'
6739 5' -57.1 NC_001875.2 + 122152 0.69 0.700503
Target:  5'- gGGUGCACG-CGCacaauuuuuucgaCAGCGCCG--CGCAg -3'
miRNA:   3'- -CCACGUGCuGCG-------------GUUGCGGUagGCGU- -5'
6739 5' -57.1 NC_001875.2 + 120964 0.67 0.806216
Target:  5'- -uUGCGCGgcaGCGCCAccgacGCgGCCA-CCGCGu -3'
miRNA:   3'- ccACGUGC---UGCGGU-----UG-CGGUaGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.