miRNA display CGI


Results 41 - 60 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 16397 0.73 0.210031
Target:  5'- aCGCGGUagGUGCGGUGuuCGUcGCCGCCa -3'
miRNA:   3'- -GCGCCAg-CGCGCCGCc-GCGuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 16530 0.68 0.455989
Target:  5'- aCGaGGUCGCGCGuGCaauacaaugacGuGCGCGGCgCGCUa -3'
miRNA:   3'- -GCgCCAGCGCGC-CG-----------C-CGCGUUG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 17333 0.81 0.05964
Target:  5'- gGCGGUUGCGCcGCcGCGCGACCGCg -3'
miRNA:   3'- gCGCCAGCGCGcCGcCGCGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 17774 0.66 0.519104
Target:  5'- aCGuCGGaaacuaGCGUGGCGuacGCGCAGcCCGCg -3'
miRNA:   3'- -GC-GCCag----CGCGCCGC---CGCGUU-GGCGg -5'
6741 3' -63.9 NC_001875.2 + 18050 0.7 0.343587
Target:  5'- uGCGacaugCGCGUGGCGGa-CAACCgGCCa -3'
miRNA:   3'- gCGCca---GCGCGCCGCCgcGUUGG-CGG- -5'
6741 3' -63.9 NC_001875.2 + 18148 0.74 0.182319
Target:  5'- uGUGaGUUacugGUGCGGCGcGCGCGacGCCGCCa -3'
miRNA:   3'- gCGC-CAG----CGCGCCGC-CGCGU--UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 18196 0.69 0.381371
Target:  5'- gGCGGgcguagGCGUGGUGGUugccCAAUCGCCg -3'
miRNA:   3'- gCGCCag----CGCGCCGCCGc---GUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 18281 0.71 0.270237
Target:  5'- aCGCGGUCGCacaaGGCcgcuucGCGCGcuuauuggccccGCCGCCg -3'
miRNA:   3'- -GCGCCAGCGcg--CCGc-----CGCGU------------UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 18443 0.78 0.098919
Target:  5'- gCGCGGUcCGCGUGGCGcgcgaaucGCGC-GCCGCUg -3'
miRNA:   3'- -GCGCCA-GCGCGCCGC--------CGCGuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 18651 0.66 0.55669
Target:  5'- gGUGGgcacgucgcaGCGCGucaCGGUGCGGCUGCUg -3'
miRNA:   3'- gCGCCag--------CGCGCc--GCCGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 19863 0.75 0.161748
Target:  5'- -uCGGcCGCGUcGCGGCGCGGgCGCCg -3'
miRNA:   3'- gcGCCaGCGCGcCGCCGCGUUgGCGG- -5'
6741 3' -63.9 NC_001875.2 + 19948 0.66 0.519104
Target:  5'- aGCGGccggCGCGaCGGUccggccGGCGCc-UCGCCg -3'
miRNA:   3'- gCGCCa---GCGC-GCCG------CCGCGuuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 20030 0.66 0.575783
Target:  5'- aCGCGGagcagccaggCGcCGuCGGCcGCGUGcACCGCCg -3'
miRNA:   3'- -GCGCCa---------GC-GC-GCCGcCGCGU-UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 20972 0.66 0.575783
Target:  5'- aCGC-GUCGCaauGCccGCaGCGCAACUGCCc -3'
miRNA:   3'- -GCGcCAGCG---CGc-CGcCGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 21058 0.72 0.249131
Target:  5'- cCGUGGUCG-GCGGCGuuuugggcaaaagacGCGCGGCgGCg -3'
miRNA:   3'- -GCGCCAGCgCGCCGC---------------CGCGUUGgCGg -5'
6741 3' -63.9 NC_001875.2 + 21190 0.7 0.350924
Target:  5'- uCGUcGUCGCGCGGCacGGC-CAG-CGCCa -3'
miRNA:   3'- -GCGcCAGCGCGCCG--CCGcGUUgGCGG- -5'
6741 3' -63.9 NC_001875.2 + 21253 0.7 0.322243
Target:  5'- aGCuGGUccaggCGCGCGcGCGGCGCGGCUacgaGCa -3'
miRNA:   3'- gCG-CCA-----GCGCGC-CGCCGCGUUGG----CGg -5'
6741 3' -63.9 NC_001875.2 + 21643 0.69 0.38846
Target:  5'- uGCGcGUUgccaaacgccaGCGCGGaCGaGCGCAgugcgacGCCGCCc -3'
miRNA:   3'- gCGC-CAG-----------CGCGCC-GC-CGCGU-------UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 21955 0.75 0.169713
Target:  5'- uCGCGG-CGCGgggaugGGCGGCGCcAgCGCCa -3'
miRNA:   3'- -GCGCCaGCGCg-----CCGCCGCGuUgGCGG- -5'
6741 3' -63.9 NC_001875.2 + 22585 0.66 0.537784
Target:  5'- gCGCGG-CGCGuUGGcCGGC-CGGCUGUa -3'
miRNA:   3'- -GCGCCaGCGC-GCC-GCCGcGUUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.