miRNA display CGI


Results 21 - 40 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 7984 0.67 0.473619
Target:  5'- uGCGGUgcuuaguugacCG-GCGGCugauuGCGCAACUGCUg -3'
miRNA:   3'- gCGCCA-----------GCgCGCCGc----CGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 9131 0.66 0.548157
Target:  5'- cCGUGGacUCGCGCGccaguucgguguccaCGGCGCA--CGCCa -3'
miRNA:   3'- -GCGCC--AGCGCGCc--------------GCCGCGUugGCGG- -5'
6741 3' -63.9 NC_001875.2 + 9702 0.67 0.482562
Target:  5'- uCGCcGUCGUGCGcGcCGGcCGC-GCCGCg -3'
miRNA:   3'- -GCGcCAGCGCGC-C-GCC-GCGuUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 10075 0.68 0.421827
Target:  5'- uGCGGUCGUGUGGa---GCAAaucgaCGCCg -3'
miRNA:   3'- gCGCCAGCGCGCCgccgCGUUg----GCGG- -5'
6741 3' -63.9 NC_001875.2 + 10395 0.69 0.389253
Target:  5'- aCGCcGcCGCGCcGUGGCGCGGcacCCGCUg -3'
miRNA:   3'- -GCGcCaGCGCGcCGCCGCGUU---GGCGG- -5'
6741 3' -63.9 NC_001875.2 + 10456 0.69 0.397241
Target:  5'- aCGCG---GCGCGGCGGCGCGcucagugaauGgCGCUu -3'
miRNA:   3'- -GCGCcagCGCGCCGCCGCGU----------UgGCGG- -5'
6741 3' -63.9 NC_001875.2 + 10868 0.83 0.047351
Target:  5'- aCGCGGUggcCGCGuCGGUGGCGCuGCCGCg -3'
miRNA:   3'- -GCGCCA---GCGC-GCCGCCGCGuUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 10931 0.67 0.46476
Target:  5'- cCGCGGUguUGCGCcacaaaaacguGGUGGCGUuugugacgcaAGCgGCCu -3'
miRNA:   3'- -GCGCCA--GCGCG-----------CCGCCGCG----------UUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 11071 0.72 0.258339
Target:  5'- aGCaGUUugGCGUGGCGcGCGCccuggacacGGCCGCCg -3'
miRNA:   3'- gCGcCAG--CGCGCCGC-CGCG---------UUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 11295 0.68 0.455989
Target:  5'- -uCGGUUGUGCacaaaccccauGGUGGCcuGCAcgACCGCCa -3'
miRNA:   3'- gcGCCAGCGCG-----------CCGCCG--CGU--UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 11825 0.71 0.282573
Target:  5'- uGUGGUCGCGcCGGUGGCGgGGUCGgUg -3'
miRNA:   3'- gCGCCAGCGC-GCCGCCGCgUUGGCgG- -5'
6741 3' -63.9 NC_001875.2 + 11877 0.66 0.528414
Target:  5'- uGCGGUgUGCGCGGCGaCGgAGgggUCGUCg -3'
miRNA:   3'- gCGCCA-GCGCGCCGCcGCgUU---GGCGG- -5'
6741 3' -63.9 NC_001875.2 + 11914 0.73 0.210522
Target:  5'- gGCGGcgagcagguguuuugCGCGCGGCGcgccgacugugcGCGCGACCGgCg -3'
miRNA:   3'- gCGCCa--------------GCGCGCCGC------------CGCGUUGGCgG- -5'
6741 3' -63.9 NC_001875.2 + 11998 0.68 0.421827
Target:  5'- gCGCGG--GUGUGGUGGCGagcGCgGCCa -3'
miRNA:   3'- -GCGCCagCGCGCCGCCGCgu-UGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 13740 0.67 0.506182
Target:  5'- uGCGGUUGCGCaGGCGGUccuccauguccaugGUgguaauguaaggaAGCgCGCCc -3'
miRNA:   3'- gCGCCAGCGCG-CCGCCG--------------CG-------------UUG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 13749 0.66 0.565261
Target:  5'- gCGCGGcgUCGCGCacaaaguGGUGGCaGCAGucuCCGUn -3'
miRNA:   3'- -GCGCC--AGCGCG-------CCGCCG-CGUU---GGCGg -5'
6741 3' -63.9 NC_001875.2 + 13788 0.7 0.322243
Target:  5'- uGuCGGacaaUCGUGCgGGUGGCGCGGCguUGCCg -3'
miRNA:   3'- gC-GCC----AGCGCG-CCGCCGCGUUG--GCGG- -5'
6741 3' -63.9 NC_001875.2 + 13887 0.71 0.308574
Target:  5'- uGUcGUCGaccaaaccaaaCGCGGCGGCGCGcacGCCgGCCu -3'
miRNA:   3'- gCGcCAGC-----------GCGCCGCCGCGU---UGG-CGG- -5'
6741 3' -63.9 NC_001875.2 + 14940 0.68 0.437864
Target:  5'- cCGCcG-CGCGCGGCuaGCGCAgacgaagaguuguGCCGUCg -3'
miRNA:   3'- -GCGcCaGCGCGCCGc-CGCGU-------------UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 16083 0.66 0.566216
Target:  5'- -aCGG-CGC-CGGUuucGGCGCAcGCCGCUa -3'
miRNA:   3'- gcGCCaGCGcGCCG---CCGCGU-UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.