miRNA display CGI


Results 21 - 40 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 118303 0.66 0.537784
Target:  5'- aCGCcgacagGGUCGa--GGCGGC-CGGCCGCg -3'
miRNA:   3'- -GCG------CCAGCgcgCCGCCGcGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 50770 0.66 0.566216
Target:  5'- aCGCGGcucuUCuCGUcGCGGCGCAccauuaCGCCg -3'
miRNA:   3'- -GCGCC----AGcGCGcCGCCGCGUug----GCGG- -5'
6741 3' -63.9 NC_001875.2 + 114029 0.66 0.537784
Target:  5'- gGCGGcCGCGCGGUccagauGGUaGCAcgcggGCUGCg -3'
miRNA:   3'- gCGCCaGCGCGCCG------CCG-CGU-----UGGCGg -5'
6741 3' -63.9 NC_001875.2 + 92745 0.66 0.575783
Target:  5'- -cCGGUgcagcaGCGCGuuGGCGUAuucguaaacGCCGCCa -3'
miRNA:   3'- gcGCCAg-----CGCGCcgCCGCGU---------UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 43105 0.66 0.537784
Target:  5'- cCGCaGUUuuGCGGCaGGuUGgAGCCGCCg -3'
miRNA:   3'- -GCGcCAGcgCGCCG-CC-GCgUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 103321 0.66 0.575783
Target:  5'- gGCGuGcCGgGCGacGCGuGCGCGACgGCUa -3'
miRNA:   3'- gCGC-CaGCgCGC--CGC-CGCGUUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 83567 0.66 0.516324
Target:  5'- aCGCGG-CGgacacaugagguguCcCGGCGGgGCG-CCGCCg -3'
miRNA:   3'- -GCGCCaGC--------------GcGCCGCCgCGUuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 69716 0.66 0.575783
Target:  5'- aCGCGcGUCGCGCuaacguuugcacGGaaucgGGCGgCGACCuGCUg -3'
miRNA:   3'- -GCGC-CAGCGCG------------CCg----CCGC-GUUGG-CGG- -5'
6741 3' -63.9 NC_001875.2 + 28826 0.66 0.519104
Target:  5'- aCGUGGUCaCGCccGCaGCGCAcuuGCCGCa -3'
miRNA:   3'- -GCGCCAGcGCGc-CGcCGCGU---UGGCGg -5'
6741 3' -63.9 NC_001875.2 + 19948 0.66 0.519104
Target:  5'- aGCGGccggCGCGaCGGUccggccGGCGCc-UCGCCg -3'
miRNA:   3'- gCGCCa---GCGC-GCCG------CCGCGuuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 97735 0.66 0.537784
Target:  5'- cCGCGaG-CGCGCGcGCucGUGCAACC-CCg -3'
miRNA:   3'- -GCGC-CaGCGCGC-CGc-CGCGUUGGcGG- -5'
6741 3' -63.9 NC_001875.2 + 85248 0.66 0.547211
Target:  5'- gCGCGGguucCGCGCu-CGGCGCGGacacgagCGCCc -3'
miRNA:   3'- -GCGCCa---GCGCGccGCCGCGUUg------GCGG- -5'
6741 3' -63.9 NC_001875.2 + 20972 0.66 0.575783
Target:  5'- aCGC-GUCGCaauGCccGCaGCGCAACUGCCc -3'
miRNA:   3'- -GCGcCAGCG---CGc-CGcCGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 24065 0.66 0.575783
Target:  5'- gCGUcuGGuUCGUuuuggGCGGCGGCGUugaguuGCgGCCu -3'
miRNA:   3'- -GCG--CC-AGCG-----CGCCGCCGCGu-----UGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 100731 0.66 0.547211
Target:  5'- uGCGG-CGCGCGGCa-CGCGuUCGUUa -3'
miRNA:   3'- gCGCCaGCGCGCCGccGCGUuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 38285 0.66 0.566216
Target:  5'- gCGCGcGUacgaCGaCGCGGUGGCGag--CGCCg -3'
miRNA:   3'- -GCGC-CA----GC-GCGCCGCCGCguugGCGG- -5'
6741 3' -63.9 NC_001875.2 + 23801 0.66 0.575783
Target:  5'- cCGaCGuGUCGCuccGCGGCgucgGGCGC-GCCGUg -3'
miRNA:   3'- -GC-GC-CAGCG---CGCCG----CCGCGuUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 17774 0.66 0.519104
Target:  5'- aCGuCGGaaacuaGCGUGGCGuacGCGCAGcCCGCg -3'
miRNA:   3'- -GC-GCCag----CGCGCCGC---CGCGUU-GGCGg -5'
6741 3' -63.9 NC_001875.2 + 110279 0.66 0.547211
Target:  5'- cCGCGGagCGCGCgGGCuGCcCcgUCGCCg -3'
miRNA:   3'- -GCGCCa-GCGCG-CCGcCGcGuuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 76449 0.66 0.528414
Target:  5'- uCGgGGggCGCGCuGGCGGCcCAcucaaugaGCUGCUg -3'
miRNA:   3'- -GCgCCa-GCGCG-CCGCCGcGU--------UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.