miRNA display CGI


Results 1 - 20 of 399 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 77729 0.66 0.519104
Target:  5'- aGUGuacaCGCGCaauucGGCGGCGCAGCaGCUu -3'
miRNA:   3'- gCGCca--GCGCG-----CCGCCGCGUUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 100731 0.66 0.547211
Target:  5'- uGCGG-CGCGCGGCa-CGCGuUCGUUa -3'
miRNA:   3'- gCGCCaGCGCGCCGccGCGUuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 20972 0.66 0.575783
Target:  5'- aCGC-GUCGCaauGCccGCaGCGCAACUGCCc -3'
miRNA:   3'- -GCGcCAGCG---CGc-CGcCGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 111906 0.66 0.519104
Target:  5'- gCGcCGGccgcucCGUGUacgGGcCGGUGCAGCUGCCg -3'
miRNA:   3'- -GC-GCCa-----GCGCG---CC-GCCGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 85248 0.66 0.547211
Target:  5'- gCGCGGguucCGCGCu-CGGCGCGGacacgagCGCCc -3'
miRNA:   3'- -GCGCCa---GCGCGccGCCGCGUUg------GCGG- -5'
6741 3' -63.9 NC_001875.2 + 7448 0.66 0.519104
Target:  5'- gCGcCGG-CGauuGCGGCGGUGU-ACgGCCg -3'
miRNA:   3'- -GC-GCCaGCg--CGCCGCCGCGuUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 76449 0.66 0.528414
Target:  5'- uCGgGGggCGCGCuGGCGGCcCAcucaaugaGCUGCUg -3'
miRNA:   3'- -GCgCCa-GCGCG-CCGCCGcGU--------UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 97735 0.66 0.537784
Target:  5'- cCGCGaG-CGCGCGcGCucGUGCAACC-CCg -3'
miRNA:   3'- -GCGC-CaGCGCGC-CGc-CGCGUUGGcGG- -5'
6741 3' -63.9 NC_001875.2 + 53927 0.66 0.547211
Target:  5'- uGCGGgCGCGuUGGC-GCGCAcgauucuuggggGcCCGCCu -3'
miRNA:   3'- gCGCCaGCGC-GCCGcCGCGU------------U-GGCGG- -5'
6741 3' -63.9 NC_001875.2 + 114029 0.66 0.537784
Target:  5'- gGCGGcCGCGCGGUccagauGGUaGCAcgcggGCUGCg -3'
miRNA:   3'- gCGCCaGCGCGCCG------CCG-CGU-----UGGCGg -5'
6741 3' -63.9 NC_001875.2 + 45634 0.66 0.528414
Target:  5'- cCGCaaGUUGUGCGGCGGCGCcucuaguuUUGCg -3'
miRNA:   3'- -GCGc-CAGCGCGCCGCCGCGuu------GGCGg -5'
6741 3' -63.9 NC_001875.2 + 75255 0.66 0.528414
Target:  5'- gGCGG-CGUcggcgaugGCGGCGGCGuCGGCgauggCGUCg -3'
miRNA:   3'- gCGCCaGCG--------CGCCGCCGC-GUUG-----GCGG- -5'
6741 3' -63.9 NC_001875.2 + 118303 0.66 0.537784
Target:  5'- aCGCcgacagGGUCGa--GGCGGC-CGGCCGCg -3'
miRNA:   3'- -GCG------CCAGCgcgCCGCCGcGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 28826 0.66 0.519104
Target:  5'- aCGUGGUCaCGCccGCaGCGCAcuuGCCGCa -3'
miRNA:   3'- -GCGCCAGcGCGc-CGcCGCGU---UGGCGg -5'
6741 3' -63.9 NC_001875.2 + 43105 0.66 0.537784
Target:  5'- cCGCaGUUuuGCGGCaGGuUGgAGCCGCCg -3'
miRNA:   3'- -GCGcCAGcgCGCCG-CC-GCgUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 34350 0.66 0.547211
Target:  5'- aGCaagCGCGCGGCGcaagagaCGCAguuGCUGCCg -3'
miRNA:   3'- gCGccaGCGCGCCGCc------GCGU---UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 110279 0.66 0.547211
Target:  5'- cCGCGGagCGCGCgGGCuGCcCcgUCGCCg -3'
miRNA:   3'- -GCGCCa-GCGCG-CCGcCGcGuuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 4852 0.66 0.520033
Target:  5'- uGCGGaacgcgugcacagcUCGUGCacgcuGCGGCGCAaacuauuuaacucgcGCCGCa -3'
miRNA:   3'- gCGCC--------------AGCGCGc----CGCCGCGU---------------UGGCGg -5'
6741 3' -63.9 NC_001875.2 + 37062 0.66 0.52748
Target:  5'- gCGCGGaCGCGgccacgcuguguuUGGCGGaCGacACCGCCn -3'
miRNA:   3'- -GCGCCaGCGC-------------GCCGCC-GCguUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 113085 0.66 0.547211
Target:  5'- gGCGa-CGCGCGuCaGCGCcuuAGCCGCCg -3'
miRNA:   3'- gCGCcaGCGCGCcGcCGCG---UUGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.