Results 1 - 20 of 399 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6741 | 3' | -63.9 | NC_001875.2 | + | 114506 | 1.11 | 0.00038 |
Target: 5'- aCGCGGUCGCGCGGCGGCGCAACCGCCa -3' miRNA: 3'- -GCGCCAGCGCGCCGCCGCGUUGGCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 39672 | 0.84 | 0.037544 |
Target: 5'- gGCGG-CGCGCGGCGGCG-AGCUGCUa -3' miRNA: 3'- gCGCCaGCGCGCCGCCGCgUUGGCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 68569 | 0.84 | 0.040569 |
Target: 5'- gGCGGUCGCGCaccgcGUGGCGCcgcuGGCCGCCg -3' miRNA: 3'- gCGCCAGCGCGc----CGCCGCG----UUGGCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 10868 | 0.83 | 0.047351 |
Target: 5'- aCGCGGUggcCGCGuCGGUGGCGCuGCCGCg -3' miRNA: 3'- -GCGCCA---GCGC-GCCGCCGCGuUGGCGg -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 114975 | 0.81 | 0.058135 |
Target: 5'- aGCGGUCGCGCuGGCGGCGCcgauuaacACgGCUa -3' miRNA: 3'- gCGCCAGCGCG-CCGCCGCGu-------UGgCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 17333 | 0.81 | 0.05964 |
Target: 5'- gGCGGUUGCGCcGCcGCGCGACCGCg -3' miRNA: 3'- gCGCCAGCGCGcCGcCGCGUUGGCGg -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 130109 | 0.81 | 0.062764 |
Target: 5'- gGCGG-CG-GCGGCGGCGCGACCGgUg -3' miRNA: 3'- gCGCCaGCgCGCCGCCGCGUUGGCgG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 39182 | 0.81 | 0.066046 |
Target: 5'- gGCGGUUGCGUGGCGuuuacgguGCGCcgcuacAACCGCCa -3' miRNA: 3'- gCGCCAGCGCGCCGC--------CGCG------UUGGCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 65772 | 0.8 | 0.069493 |
Target: 5'- gCGCGG-CGgGCGGCGGCGCGucgucguugAgCGCCa -3' miRNA: 3'- -GCGCCaGCgCGCCGCCGCGU---------UgGCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 98789 | 0.8 | 0.076718 |
Target: 5'- gCGCGGaacgcuaUCGCGCGGCgcGGCGC--CCGCCg -3' miRNA: 3'- -GCGCC-------AGCGCGCCG--CCGCGuuGGCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 102581 | 0.8 | 0.076913 |
Target: 5'- gCGCGGUCG-GCGGCcGCGCAcCCGCa -3' miRNA: 3'- -GCGCCAGCgCGCCGcCGCGUuGGCGg -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 99920 | 0.8 | 0.076913 |
Target: 5'- aGCGGgcCGCGCGcGCGGUGCAgcGCgGCCa -3' miRNA: 3'- gCGCCa-GCGCGC-CGCCGCGU--UGgCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 43313 | 0.79 | 0.078883 |
Target: 5'- aGCGGcgcgCGCGCGGguCGGCGUgguuGCCGCCg -3' miRNA: 3'- gCGCCa---GCGCGCC--GCCGCGu---UGGCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 40662 | 0.79 | 0.083811 |
Target: 5'- gGCuGUUGCGCGGCGacauuccguccaauuGCGCGACCGUCa -3' miRNA: 3'- gCGcCAGCGCGCCGC---------------CGCGUUGGCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 63270 | 0.79 | 0.089481 |
Target: 5'- aGCGG-CGCcacGCGGU-GCGCGACCGCCg -3' miRNA: 3'- gCGCCaGCG---CGCCGcCGCGUUGGCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 30805 | 0.78 | 0.093383 |
Target: 5'- uGCGGUucaaagcaaguuUGCGCGGCGGCaaacagguuguugcGCAaaACCGCCg -3' miRNA: 3'- gCGCCA------------GCGCGCCGCCG--------------CGU--UGGCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 101999 | 0.78 | 0.098919 |
Target: 5'- uGCGGcgUGCGCGGCGGCgguggacuGCAGCgUGCCg -3' miRNA: 3'- gCGCCa-GCGCGCCGCCG--------CGUUG-GCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 18443 | 0.78 | 0.098919 |
Target: 5'- gCGCGGUcCGCGUGGCGcgcgaaucGCGC-GCCGCUg -3' miRNA: 3'- -GCGCCA-GCGCGCCGC--------CGCGuUGGCGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 88721 | 0.78 | 0.101422 |
Target: 5'- aGUGGaUGCGCGGCGGCucCAACCuGCCg -3' miRNA: 3'- gCGCCaGCGCGCCGCCGc-GUUGG-CGG- -5' |
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6741 | 3' | -63.9 | NC_001875.2 | + | 92644 | 0.78 | 0.107674 |
Target: 5'- gGCGGUUGUaGCGGCGcaccguaaacgccaCGCAACCGCCg -3' miRNA: 3'- gCGCCAGCG-CGCCGCc-------------GCGUUGGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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