miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 100597 0.74 0.186702
Target:  5'- aCGCGGgcCGgGCGcCGGcCGCGGCCGCUg -3'
miRNA:   3'- -GCGCCa-GCgCGCcGCC-GCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 53999 0.76 0.13316
Target:  5'- aGCuGGUCGCGCacggccuuGGCGGCGCGcgcguACCGgCa -3'
miRNA:   3'- gCG-CCAGCGCG--------CCGCCGCGU-----UGGCgG- -5'
6741 3' -63.9 NC_001875.2 + 113566 0.76 0.136461
Target:  5'- gCGCGGUCGCGCa-CGGCGC-GCCauuggGCCa -3'
miRNA:   3'- -GCGCCAGCGCGccGCCGCGuUGG-----CGG- -5'
6741 3' -63.9 NC_001875.2 + 110735 0.76 0.139837
Target:  5'- aCGCGGggCGCGUGcaguuuaagcGCGGCGaCcGCCGCCg -3'
miRNA:   3'- -GCGCCa-GCGCGC----------CGCCGC-GuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 131511 0.76 0.148255
Target:  5'- uGCGG-CGCGCGGUgcagcggcuggaagcGGCGCAaaGCgCGCCc -3'
miRNA:   3'- gCGCCaGCGCGCCG---------------CCGCGU--UG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 50023 0.75 0.15043
Target:  5'- gCGUGGUCGcCG-GGCGGCGaGGCgGCCg -3'
miRNA:   3'- -GCGCCAGC-GCgCCGCCGCgUUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 47902 0.75 0.169713
Target:  5'- aGU--UCGCGCGGUGGUGCuGCCGCa -3'
miRNA:   3'- gCGccAGCGCGCCGCCGCGuUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 18148 0.74 0.182319
Target:  5'- uGUGaGUUacugGUGCGGCGcGCGCGacGCCGCCa -3'
miRNA:   3'- gCGC-CAG----CGCGCCGC-CGCGU--UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 36578 0.74 0.182319
Target:  5'- gCGCGGcUGuUGCaaaauGCGGCGCAGCCGCUg -3'
miRNA:   3'- -GCGCCaGC-GCGc----CGCCGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 32775 0.77 0.114854
Target:  5'- gCGCGuccUCGCGCGGCGuGgGCGGgCGCCg -3'
miRNA:   3'- -GCGCc--AGCGCGCCGC-CgCGUUgGCGG- -5'
6741 3' -63.9 NC_001875.2 + 80626 0.77 0.114854
Target:  5'- gCGCGGaacgCGCGCucgacgGGCGGCGCcagAACCGCg -3'
miRNA:   3'- -GCGCCa---GCGCG------CCGCCGCG---UUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 831 0.77 0.112041
Target:  5'- gGUGGUgGgGCGGUGGUGCAGCaCGUCc -3'
miRNA:   3'- gCGCCAgCgCGCCGCCGCGUUG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 68569 0.84 0.040569
Target:  5'- gGCGGUCGCGCaccgcGUGGCGCcgcuGGCCGCCg -3'
miRNA:   3'- gCGCCAGCGCGc----CGCCGCG----UUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 10868 0.83 0.047351
Target:  5'- aCGCGGUggcCGCGuCGGUGGCGCuGCCGCg -3'
miRNA:   3'- -GCGCCA---GCGC-GCCGCCGCGuUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 17333 0.81 0.05964
Target:  5'- gGCGGUUGCGCcGCcGCGCGACCGCg -3'
miRNA:   3'- gCGCCAGCGCGcCGcCGCGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 39182 0.81 0.066046
Target:  5'- gGCGGUUGCGUGGCGuuuacgguGCGCcgcuacAACCGCCa -3'
miRNA:   3'- gCGCCAGCGCGCCGC--------CGCG------UUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 65772 0.8 0.069493
Target:  5'- gCGCGG-CGgGCGGCGGCGCGucgucguugAgCGCCa -3'
miRNA:   3'- -GCGCCaGCgCGCCGCCGCGU---------UgGCGG- -5'
6741 3' -63.9 NC_001875.2 + 98789 0.8 0.076718
Target:  5'- gCGCGGaacgcuaUCGCGCGGCgcGGCGC--CCGCCg -3'
miRNA:   3'- -GCGCC-------AGCGCGCCG--CCGCGuuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 43313 0.79 0.078883
Target:  5'- aGCGGcgcgCGCGCGGguCGGCGUgguuGCCGCCg -3'
miRNA:   3'- gCGCCa---GCGCGCC--GCCGCGu---UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 30805 0.78 0.093383
Target:  5'- uGCGGUucaaagcaaguuUGCGCGGCGGCaaacagguuguugcGCAaaACCGCCg -3'
miRNA:   3'- gCGCCA------------GCGCGCCGCCG--------------CGU--UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.