miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 831 0.77 0.112041
Target:  5'- gGUGGUgGgGCGGUGGUGCAGCaCGUCc -3'
miRNA:   3'- gCGCCAgCgCGCCGCCGCGUUG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 1010 0.67 0.504348
Target:  5'- uGCGGgcccguucuugcagCGCGUGGCGGgGCccgAGgCGCa -3'
miRNA:   3'- gCGCCa-------------GCGCGCCGCCgCG---UUgGCGg -5'
6741 3' -63.9 NC_001875.2 + 1721 0.73 0.225204
Target:  5'- uGCGGgCGCGacacCGGUcGCGCcGCCGCCg -3'
miRNA:   3'- gCGCCaGCGC----GCCGcCGCGuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 2295 0.66 0.528414
Target:  5'- gCGCGcG-CGcCGUGGcCGcGCGCAGCUcgGCCa -3'
miRNA:   3'- -GCGC-CaGC-GCGCC-GC-CGCGUUGG--CGG- -5'
6741 3' -63.9 NC_001875.2 + 2663 0.73 0.224684
Target:  5'- uGCGG-CGC-CGGCGGCGCcuggggcAACUGCg -3'
miRNA:   3'- gCGCCaGCGcGCCGCCGCG-------UUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 3079 0.68 0.412706
Target:  5'- cCGgGGUCGCccaCGGCgugcacgcgccggGGCGCGGCuCGCg -3'
miRNA:   3'- -GCgCCAGCGc--GCCG-------------CCGCGUUG-GCGg -5'
6741 3' -63.9 NC_001875.2 + 3155 0.73 0.230465
Target:  5'- aCGCGGcgUCGgGCGGCGaGUaggugagccgGCGGCCGCg -3'
miRNA:   3'- -GCGCC--AGCgCGCCGC-CG----------CGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 3828 0.7 0.350924
Target:  5'- uCGuCGG-CGCaCGcCGGCGCGGCCGCa -3'
miRNA:   3'- -GC-GCCaGCGcGCcGCCGCGUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 3856 0.71 0.27635
Target:  5'- aGCaGGuUCGUGUGGCacGGCaGCAccgcGCCGCCa -3'
miRNA:   3'- gCG-CC-AGCGCGCCG--CCG-CGU----UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 4504 0.67 0.491586
Target:  5'- uGCGucugcucCGCuGCGgaaaGCGGCGC-ACCGCCg -3'
miRNA:   3'- gCGCca-----GCG-CGC----CGCCGCGuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 4852 0.66 0.520033
Target:  5'- uGCGGaacgcgugcacagcUCGUGCacgcuGCGGCGCAaacuauuuaacucgcGCCGCa -3'
miRNA:   3'- gCGCC--------------AGCGCGc----CGCCGCGU---------------UGGCGg -5'
6741 3' -63.9 NC_001875.2 + 5735 0.68 0.41353
Target:  5'- aGUGGUCGUugaugGCGacGCGGCGCuugcuuugcACCGCg -3'
miRNA:   3'- gCGCCAGCG-----CGC--CGCCGCGu--------UGGCGg -5'
6741 3' -63.9 NC_001875.2 + 5975 0.67 0.473619
Target:  5'- uGUGGUCGcCGaCGGCaGGCcCAGCgcgUGCCg -3'
miRNA:   3'- gCGCCAGC-GC-GCCG-CCGcGUUG---GCGG- -5'
6741 3' -63.9 NC_001875.2 + 6870 0.69 0.358371
Target:  5'- aGCGGaCGCGCGGCGaCGCggUCa-- -3'
miRNA:   3'- gCGCCaGCGCGCCGCcGCGuuGGcgg -5'
6741 3' -63.9 NC_001875.2 + 6943 0.7 0.329246
Target:  5'- aCGC-GUCGUGCGuGCGcCGCGACauCGCCa -3'
miRNA:   3'- -GCGcCAGCGCGC-CGCcGCGUUG--GCGG- -5'
6741 3' -63.9 NC_001875.2 + 6999 0.72 0.266622
Target:  5'- uGUGGgUGUGCugcuggccGGCGGCGCGuaucugaccuuuagcGCCGCCa -3'
miRNA:   3'- gCGCCaGCGCG--------CCGCCGCGU---------------UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 7104 0.73 0.230465
Target:  5'- gCGCGGcUCG-GaCGGCGGCGaAACgGCCg -3'
miRNA:   3'- -GCGCC-AGCgC-GCCGCCGCgUUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 7391 0.72 0.258339
Target:  5'- aCGCGGUUGCGCGacGCGGuCGCAaaACauauuggGCCc -3'
miRNA:   3'- -GCGCCAGCGCGC--CGCC-GCGU--UGg------CGG- -5'
6741 3' -63.9 NC_001875.2 + 7448 0.66 0.519104
Target:  5'- gCGcCGG-CGauuGCGGCGGUGU-ACgGCCg -3'
miRNA:   3'- -GC-GCCaGCg--CGCCGCCGCGuUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 7843 0.69 0.389253
Target:  5'- gCGUGGUCGCGCGcaacaUGCAGCCGUa -3'
miRNA:   3'- -GCGCCAGCGCGCcgcc-GCGUUGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.