miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 131760 0.72 0.234209
Target:  5'- gGCGGaUCGgGCGGCGcGUcauuggugucguucGCcGCCGCCg -3'
miRNA:   3'- gCGCC-AGCgCGCCGC-CG--------------CGuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 131537 0.68 0.41353
Target:  5'- aGCGGa-GCGCGGacgaGGUGCugGACCugGCCa -3'
miRNA:   3'- gCGCCagCGCGCCg---CCGCG--UUGG--CGG- -5'
6741 3' -63.9 NC_001875.2 + 131511 0.76 0.148255
Target:  5'- uGCGG-CGCGCGGUgcagcggcuggaagcGGCGCAaaGCgCGCCc -3'
miRNA:   3'- gCGCCaGCGCGCCG---------------CCGCGU--UG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 130656 0.66 0.547211
Target:  5'- uGCGGUUcaGCGUGGCaaaguGcCGCGACgaCGCCu -3'
miRNA:   3'- gCGCCAG--CGCGCCGc----C-GCGUUG--GCGG- -5'
6741 3' -63.9 NC_001875.2 + 130292 0.66 0.566216
Target:  5'- gGCGGUUGCGUGGUuugcGGCaaaauaGCGGgCGUUg -3'
miRNA:   3'- gCGCCAGCGCGCCG----CCG------CGUUgGCGG- -5'
6741 3' -63.9 NC_001875.2 + 130109 0.81 0.062764
Target:  5'- gGCGG-CG-GCGGCGGCGCGACCGgUg -3'
miRNA:   3'- gCGCCaGCgCGCCGCCGCGUUGGCgG- -5'
6741 3' -63.9 NC_001875.2 + 130061 0.73 0.225726
Target:  5'- gGCGG-CG-GCGGCGGCGgCAugcucguggucacauCCGCCg -3'
miRNA:   3'- gCGCCaGCgCGCCGCCGC-GUu--------------GGCGG- -5'
6741 3' -63.9 NC_001875.2 + 130016 0.69 0.402085
Target:  5'- gGCGG-CG-GCGGCGGCauGCucguggucacauCCGCCg -3'
miRNA:   3'- gCGCCaGCgCGCCGCCG--CGuu----------GGCGG- -5'
6741 3' -63.9 NC_001875.2 + 129965 0.73 0.210031
Target:  5'- gGCGG-CG-GCGGCGGCGgCGGCgGCg -3'
miRNA:   3'- gCGCCaGCgCGCCGCCGC-GUUGgCGg -5'
6741 3' -63.9 NC_001875.2 + 128742 0.68 0.41353
Target:  5'- gCGCGaGcCGCGCccCGGCGCGuGCaCGCCg -3'
miRNA:   3'- -GCGC-CaGCGCGccGCCGCGU-UG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 128705 0.68 0.421827
Target:  5'- cCGCGucCGCGCaGCGG-GCuucGCCGCCc -3'
miRNA:   3'- -GCGCcaGCGCGcCGCCgCGu--UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 128011 0.76 0.126777
Target:  5'- uGCGGcCGCGcCGGCGuGCGCcgacGACgGCCg -3'
miRNA:   3'- gCGCCaGCGC-GCCGC-CGCG----UUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 127965 0.66 0.575783
Target:  5'- uGCcca-GCuuGGCGGCGCGguGCUGCCg -3'
miRNA:   3'- gCGccagCGcgCCGCCGCGU--UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 127380 0.7 0.340683
Target:  5'- gCGCGGacggcgcUCagagccuggccaaaGUGCuGGCGGCGCGcgucagcauGCCGCCg -3'
miRNA:   3'- -GCGCC-------AG--------------CGCG-CCGCCGCGU---------UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 127278 0.68 0.438718
Target:  5'- uGCGGcugcUCGCGUugcuGGCGGCccccaAACCGCa -3'
miRNA:   3'- gCGCC----AGCGCG----CCGCCGcg---UUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 126622 0.66 0.522821
Target:  5'- gGCGcauGUCGauCGUGGCgucgGGCGCGuaaaccuggacguugACCGCCa -3'
miRNA:   3'- gCGC---CAGC--GCGCCG----CCGCGU---------------UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 126008 0.69 0.357622
Target:  5'- aCGCGGgCGCGUccagaucGGCGGCGCuGGCaGUCu -3'
miRNA:   3'- -GCGCCaGCGCG-------CCGCCGCG-UUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 125340 0.67 0.50894
Target:  5'- gGCGGccaGCGUGuuGGCGCGGCacuccgcguugggCGCCg -3'
miRNA:   3'- gCGCCag-CGCGCcgCCGCGUUG-------------GCGG- -5'
6741 3' -63.9 NC_001875.2 + 124986 0.71 0.288906
Target:  5'- aGCGGUCGUGCGGCaaauuGuaGgAGCCGUa -3'
miRNA:   3'- gCGCCAGCGCGCCG-----CcgCgUUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 124791 0.73 0.208076
Target:  5'- gCGCGGaUUaugucuugcaccaGCGUGGCGGCGCuAaaggucagauacgcGCCGCCg -3'
miRNA:   3'- -GCGCC-AG-------------CGCGCCGCCGCG-U--------------UGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.