miRNA display CGI


Results 1 - 20 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 114506 1.11 0.00038
Target:  5'- aCGCGGUCGCGCGGCGGCGCAACCGCCa -3'
miRNA:   3'- -GCGCCAGCGCGCCGCCGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 124725 0.75 0.15043
Target:  5'- aGCGG-CGCGUGGCGGUcaaugucgGCAGCgCGCg -3'
miRNA:   3'- gCGCCaGCGCGCCGCCG--------CGUUG-GCGg -5'
6741 3' -63.9 NC_001875.2 + 66112 0.75 0.157892
Target:  5'- gCGCGG-CGgGCGGCgaGGCGgcGCCGCCc -3'
miRNA:   3'- -GCGCCaGCgCGCCG--CCGCguUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 20972 0.66 0.575783
Target:  5'- aCGC-GUCGCaauGCccGCaGCGCAACUGCCc -3'
miRNA:   3'- -GCGcCAGCG---CGc-CGcCGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 99920 0.8 0.076913
Target:  5'- aGCGGgcCGCGCGcGCGGUGCAgcGCgGCCa -3'
miRNA:   3'- gCGCCa-GCGCGC-CGCCGCGU--UGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 40662 0.79 0.083811
Target:  5'- gGCuGUUGCGCGGCGacauuccguccaauuGCGCGACCGUCa -3'
miRNA:   3'- gCGcCAGCGCGCCGC---------------CGCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 18443 0.78 0.098919
Target:  5'- gCGCGGUcCGCGUGGCGcgcgaaucGCGC-GCCGCUg -3'
miRNA:   3'- -GCGCCA-GCGCGCCGC--------CGCGuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 101999 0.78 0.098919
Target:  5'- uGCGGcgUGCGCGGCGGCgguggacuGCAGCgUGCCg -3'
miRNA:   3'- gCGCCa-GCGCGCCGCCG--------CGUUG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 128011 0.76 0.126777
Target:  5'- uGCGGcCGCGcCGGCGuGCGCcgacGACgGCCg -3'
miRNA:   3'- gCGCCaGCGC-GCCGC-CGCG----UUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 43597 0.76 0.146821
Target:  5'- gGCGGca--GCGGCGGCGCGcGCCGCUu -3'
miRNA:   3'- gCGCCagcgCGCCGCCGCGU-UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 59907 0.76 0.129932
Target:  5'- gCGCGGagCGCGCGGUcaaGGCGC--UCGCCg -3'
miRNA:   3'- -GCGCCa-GCGCGCCG---CCGCGuuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 92644 0.78 0.107674
Target:  5'- gGCGGUUGUaGCGGCGcaccguaaacgccaCGCAACCGCCg -3'
miRNA:   3'- gCGCCAGCG-CGCCGCc-------------GCGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 114975 0.81 0.058135
Target:  5'- aGCGGUCGCGCuGGCGGCGCcgauuaacACgGCUa -3'
miRNA:   3'- gCGCCAGCGCG-CCGCCGCGu-------UGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 81476 0.76 0.13316
Target:  5'- cCGCGGUCa-GUGGCGcGCGCGGCCcgacGCCa -3'
miRNA:   3'- -GCGCCAGcgCGCCGC-CGCGUUGG----CGG- -5'
6741 3' -63.9 NC_001875.2 + 130109 0.81 0.062764
Target:  5'- gGCGG-CG-GCGGCGGCGCGACCGgUg -3'
miRNA:   3'- gCGCCaGCgCGCCGCCGCGUUGGCgG- -5'
6741 3' -63.9 NC_001875.2 + 88721 0.78 0.101422
Target:  5'- aGUGGaUGCGCGGCGGCucCAACCuGCCg -3'
miRNA:   3'- gCGCCaGCGCGCCGCCGc-GUUGG-CGG- -5'
6741 3' -63.9 NC_001875.2 + 119898 0.76 0.14329
Target:  5'- cCGcCGGUCGCGCGcacaguCGGCGC-GCCGCg -3'
miRNA:   3'- -GC-GCCAGCGCGCc-----GCCGCGuUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 36099 0.75 0.157892
Target:  5'- gCGCGGcagCaCGCGGCGGCGgcGCCGCUc -3'
miRNA:   3'- -GCGCCa--GcGCGCCGCCGCguUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 102581 0.8 0.076913
Target:  5'- gCGCGGUCG-GCGGCcGCGCAcCCGCa -3'
miRNA:   3'- -GCGCCAGCgCGCCGcCGCGUuGGCGg -5'
6741 3' -63.9 NC_001875.2 + 63270 0.79 0.089481
Target:  5'- aGCGG-CGCcacGCGGU-GCGCGACCGCCg -3'
miRNA:   3'- gCGCCaGCG---CGCCGcCGCGUUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.