miRNA display CGI


Results 21 - 40 of 399 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 3' -63.9 NC_001875.2 + 831 0.77 0.112041
Target:  5'- gGUGGUgGgGCGGUGGUGCAGCaCGUCc -3'
miRNA:   3'- gCGCCAgCgCGCCGCCGCGUUG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 32775 0.77 0.114854
Target:  5'- gCGCGuccUCGCGCGGCGuGgGCGGgCGCCg -3'
miRNA:   3'- -GCGCc--AGCGCGCCGC-CgCGUUgGCGG- -5'
6741 3' -63.9 NC_001875.2 + 80626 0.77 0.114854
Target:  5'- gCGCGGaacgCGCGCucgacgGGCGGCGCcagAACCGCg -3'
miRNA:   3'- -GCGCCa---GCGCG------CCGCCGCG---UUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 128011 0.76 0.126777
Target:  5'- uGCGGcCGCGcCGGCGuGCGCcgacGACgGCCg -3'
miRNA:   3'- gCGCCaGCGC-GCCGC-CGCG----UUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 59907 0.76 0.129932
Target:  5'- gCGCGGagCGCGCGGUcaaGGCGC--UCGCCg -3'
miRNA:   3'- -GCGCCa-GCGCGCCG---CCGCGuuGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 73651 0.76 0.129932
Target:  5'- uGCGG-CGgcUGCGGCGGCuGCGGCUGCUg -3'
miRNA:   3'- gCGCCaGC--GCGCCGCCG-CGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 81476 0.76 0.13316
Target:  5'- cCGCGGUCa-GUGGCGcGCGCGGCCcgacGCCa -3'
miRNA:   3'- -GCGCCAGcgCGCCGC-CGCGUUGG----CGG- -5'
6741 3' -63.9 NC_001875.2 + 53999 0.76 0.13316
Target:  5'- aGCuGGUCGCGCacggccuuGGCGGCGCGcgcguACCGgCa -3'
miRNA:   3'- gCG-CCAGCGCG--------CCGCCGCGU-----UGGCgG- -5'
6741 3' -63.9 NC_001875.2 + 113566 0.76 0.136461
Target:  5'- gCGCGGUCGCGCa-CGGCGC-GCCauuggGCCa -3'
miRNA:   3'- -GCGCCAGCGCGccGCCGCGuUGG-----CGG- -5'
6741 3' -63.9 NC_001875.2 + 110735 0.76 0.139837
Target:  5'- aCGCGGggCGCGUGcaguuuaagcGCGGCGaCcGCCGCCg -3'
miRNA:   3'- -GCGCCa-GCGCGC----------CGCCGC-GuUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 119898 0.76 0.14329
Target:  5'- cCGcCGGUCGCGCGcacaguCGGCGC-GCCGCg -3'
miRNA:   3'- -GC-GCCAGCGCGCc-----GCCGCGuUGGCGg -5'
6741 3' -63.9 NC_001875.2 + 43597 0.76 0.146821
Target:  5'- gGCGGca--GCGGCGGCGCGcGCCGCUu -3'
miRNA:   3'- gCGCCagcgCGCCGCCGCGU-UGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 131511 0.76 0.148255
Target:  5'- uGCGG-CGCGCGGUgcagcggcuggaagcGGCGCAaaGCgCGCCc -3'
miRNA:   3'- gCGCCaGCGCGCCG---------------CCGCGU--UG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 50023 0.75 0.15043
Target:  5'- gCGUGGUCGcCG-GGCGGCGaGGCgGCCg -3'
miRNA:   3'- -GCGCCAGC-GCgCCGCCGCgUUGgCGG- -5'
6741 3' -63.9 NC_001875.2 + 124725 0.75 0.15043
Target:  5'- aGCGG-CGCGUGGCGGUcaaugucgGCAGCgCGCg -3'
miRNA:   3'- gCGCCaGCGCGCCGCCG--------CGUUG-GCGg -5'
6741 3' -63.9 NC_001875.2 + 73696 0.75 0.157892
Target:  5'- gGCGGcUGCuGCGGCGGCuGCGGCUGUUg -3'
miRNA:   3'- gCGCCaGCG-CGCCGCCG-CGUUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 66112 0.75 0.157892
Target:  5'- gCGCGG-CGgGCGGCgaGGCGgcGCCGCCc -3'
miRNA:   3'- -GCGCCaGCgCGCCG--CCGCguUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 36099 0.75 0.157892
Target:  5'- gCGCGGcagCaCGCGGCGGCGgcGCCGCUc -3'
miRNA:   3'- -GCGCCa--GcGCGCCGCCGCguUGGCGG- -5'
6741 3' -63.9 NC_001875.2 + 83320 0.75 0.161748
Target:  5'- cCGCGGggCGCGCGcCGG-GCGGCgCGCCa -3'
miRNA:   3'- -GCGCCa-GCGCGCcGCCgCGUUG-GCGG- -5'
6741 3' -63.9 NC_001875.2 + 77257 0.75 0.161748
Target:  5'- cCGUGGgCGCGCcgccgGGCGaaGCGGCCGCCg -3'
miRNA:   3'- -GCGCCaGCGCG-----CCGCcgCGUUGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.