miRNA display CGI


Results 41 - 60 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 5' -56 NC_001875.2 + 101079 0.66 0.847401
Target:  5'- uUUGGCGUgGGCGGaGCUauacaGCGACaGCg -3'
miRNA:   3'- -AAUUGUAgCCGCCgCGAg----UGCUG-CGa -5'
6741 5' -56 NC_001875.2 + 29026 0.66 0.847401
Target:  5'- -cGAUuugCGGCGGCGaCgggcuaaACGACGCg -3'
miRNA:   3'- aaUUGua-GCCGCCGC-Gag-----UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 51319 0.66 0.847401
Target:  5'- -gGGCGUCGGCca-GCUCGC-ACGCg -3'
miRNA:   3'- aaUUGUAGCCGccgCGAGUGcUGCGa -5'
6741 5' -56 NC_001875.2 + 7928 0.66 0.847401
Target:  5'- -aGACG-CGGUGGCGCUCAauuCGAacgGCc -3'
miRNA:   3'- aaUUGUaGCCGCCGCGAGU---GCUg--CGa -5'
6741 5' -56 NC_001875.2 + 111971 0.66 0.847401
Target:  5'- --cGCAaaCGGCGcccGCGC-CGCGACGCg -3'
miRNA:   3'- aauUGUa-GCCGC---CGCGaGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 57687 0.66 0.847401
Target:  5'- -aAGCuggCGGCGGCGggCGCcGCGCc -3'
miRNA:   3'- aaUUGua-GCCGCCGCgaGUGcUGCGa -5'
6741 5' -56 NC_001875.2 + 73632 0.66 0.847401
Target:  5'- -cGGCGgcugCGGCGGCuGCU-GCGGCgGCUg -3'
miRNA:   3'- aaUUGUa---GCCGCCG-CGAgUGCUG-CGA- -5'
6741 5' -56 NC_001875.2 + 86129 0.66 0.846586
Target:  5'- gUGGcCAUCGGCagugcgcGGCGCgCGCGGCGa- -3'
miRNA:   3'- aAUU-GUAGCCG-------CCGCGaGUGCUGCga -5'
6741 5' -56 NC_001875.2 + 36593 0.66 0.839162
Target:  5'- ---gUAUCGGCGcguguacgguuaGCGCUCACGuaaauaagaGCGCa -3'
miRNA:   3'- aauuGUAGCCGC------------CGCGAGUGC---------UGCGa -5'
6741 5' -56 NC_001875.2 + 113609 0.66 0.839162
Target:  5'- ----aGUCGGCGGCGggcCGCGGCGg- -3'
miRNA:   3'- aauugUAGCCGCCGCga-GUGCUGCga -5'
6741 5' -56 NC_001875.2 + 36659 0.66 0.839162
Target:  5'- --cGCGUCGuGCGcGCugaGCUCGgGGCGCg -3'
miRNA:   3'- aauUGUAGC-CGC-CG---CGAGUgCUGCGa -5'
6741 5' -56 NC_001875.2 + 113297 0.66 0.839162
Target:  5'- -cAAUGUCGGUGGCGaugccaaaCACGAgCGCg -3'
miRNA:   3'- aaUUGUAGCCGCCGCga------GUGCU-GCGa -5'
6741 5' -56 NC_001875.2 + 16939 0.66 0.839162
Target:  5'- --cGCAUCGGCGcguuGCGC-CACGugaccaccaGCGCUu -3'
miRNA:   3'- aauUGUAGCCGC----CGCGaGUGC---------UGCGA- -5'
6741 5' -56 NC_001875.2 + 110170 0.66 0.839162
Target:  5'- ---uCGUCGGgCGGCGUcgCACuGCGCUc -3'
miRNA:   3'- aauuGUAGCC-GCCGCGa-GUGcUGCGA- -5'
6741 5' -56 NC_001875.2 + 120286 0.67 0.830727
Target:  5'- --cGCuUCGGCGGCGCgUACGAaauugGCg -3'
miRNA:   3'- aauUGuAGCCGCCGCGaGUGCUg----CGa -5'
6741 5' -56 NC_001875.2 + 75604 0.67 0.830727
Target:  5'- aUGGCGUCGGCguuggcgucGGCGUUgGCGucgGCGUUg -3'
miRNA:   3'- aAUUGUAGCCG---------CCGCGAgUGC---UGCGA- -5'
6741 5' -56 NC_001875.2 + 122111 0.67 0.830727
Target:  5'- -cGACAgucgcCGGCuGGCGUUCAUGACa-- -3'
miRNA:   3'- aaUUGUa----GCCG-CCGCGAGUGCUGcga -5'
6741 5' -56 NC_001875.2 + 24414 0.67 0.830727
Target:  5'- cUGGCGUCGGgGGCGUaacugaACG-CGCg -3'
miRNA:   3'- aAUUGUAGCCgCCGCGag----UGCuGCGa -5'
6741 5' -56 NC_001875.2 + 40834 0.67 0.830727
Target:  5'- -cGGCcgUGGgcaagaCGGCGCUCGCcaaGACGCg -3'
miRNA:   3'- aaUUGuaGCC------GCCGCGAGUG---CUGCGa -5'
6741 5' -56 NC_001875.2 + 41456 0.67 0.830727
Target:  5'- -aGGCGcCGGUugcGGCGCgCGCGGCGUg -3'
miRNA:   3'- aaUUGUaGCCG---CCGCGaGUGCUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.