miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 5' -56 NC_001875.2 + 75346 0.66 0.863263
Target:  5'- aUGGCGUCGGCgauGGCGU---CGGCGUUg -3'
miRNA:   3'- aAUUGUAGCCG---CCGCGaguGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 80300 0.66 0.863263
Target:  5'- --cGCGUCGGC-GUGUUCGCcaGCGCUa -3'
miRNA:   3'- aauUGUAGCCGcCGCGAGUGc-UGCGA- -5'
6741 5' -56 NC_001875.2 + 37102 0.66 0.863263
Target:  5'- --cGCGUgGGUGuGCGggCGCGGCGCc -3'
miRNA:   3'- aauUGUAgCCGC-CGCgaGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 78150 0.66 0.863263
Target:  5'- gUGACAaacgUGuuGGCGCUgCGCGGCGCc -3'
miRNA:   3'- aAUUGUa---GCcgCCGCGA-GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 90455 0.66 0.863263
Target:  5'- -aGGCGUCGGUGG-GCggCGCGuaauuuCGCUg -3'
miRNA:   3'- aaUUGUAGCCGCCgCGa-GUGCu-----GCGA- -5'
6741 5' -56 NC_001875.2 + 6944 0.66 0.863263
Target:  5'- --cGCGUCGuGCGuGCGCcgcgacaucgcCACGGCGCg -3'
miRNA:   3'- aauUGUAGC-CGC-CGCGa----------GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 126023 0.66 0.86249
Target:  5'- ----gAUCGGCGGCGCUgGCaGucuacuaccuuauGCGCa -3'
miRNA:   3'- aauugUAGCCGCCGCGAgUG-C-------------UGCGa -5'
6741 5' -56 NC_001875.2 + 33940 0.66 0.860938
Target:  5'- -gGGCGUCGGCGccgacgcccgcaacGUGCccgUGCGGCGCg -3'
miRNA:   3'- aaUUGUAGCCGC--------------CGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 33664 0.66 0.858594
Target:  5'- ---cCGUCGGCGGCGUgguaaaacaaacggCcCGACGUg -3'
miRNA:   3'- aauuGUAGCCGCCGCGa-------------GuGCUGCGa -5'
6741 5' -56 NC_001875.2 + 120646 0.66 0.855437
Target:  5'- -cGGCG-CGGCGucGUGCUCcacaACGGCGCg -3'
miRNA:   3'- aaUUGUaGCCGC--CGCGAG----UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 21237 0.66 0.855437
Target:  5'- -cAACAccagUUGGCgaagcugguccaGGCGCgcgCGCGGCGCg -3'
miRNA:   3'- aaUUGU----AGCCG------------CCGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 89356 0.66 0.855437
Target:  5'- -gGACGaCGGCGuGCGCgugCGCGuguUGCUg -3'
miRNA:   3'- aaUUGUaGCCGC-CGCGa--GUGCu--GCGA- -5'
6741 5' -56 NC_001875.2 + 77094 0.66 0.855437
Target:  5'- cUGGCGgugcCGGCGGUGCgcccgCACGGCu-- -3'
miRNA:   3'- aAUUGUa---GCCGCCGCGa----GUGCUGcga -5'
6741 5' -56 NC_001875.2 + 99713 0.66 0.855437
Target:  5'- -gAGCGcUauGCGGCGCUCGCaaguGCGCg -3'
miRNA:   3'- aaUUGU-AgcCGCCGCGAGUGc---UGCGa -5'
6741 5' -56 NC_001875.2 + 98894 0.66 0.855437
Target:  5'- -cGACAUggCGaGCGGCGCgCAaacUGACGCg -3'
miRNA:   3'- aaUUGUA--GC-CGCCGCGaGU---GCUGCGa -5'
6741 5' -56 NC_001875.2 + 119047 0.66 0.855437
Target:  5'- -aGACuggucCGGCGuGCGCaugugCGCGGCGCc -3'
miRNA:   3'- aaUUGua---GCCGC-CGCGa----GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 36110 0.66 0.855437
Target:  5'- --cGCggCGGCGGCGCcgcucaugcacuUCGCGuuucaGCGCg -3'
miRNA:   3'- aauUGuaGCCGCCGCG------------AGUGC-----UGCGa -5'
6741 5' -56 NC_001875.2 + 49347 0.66 0.855437
Target:  5'- -cAGCGUgGGCGGCGggC-CGugGUg -3'
miRNA:   3'- aaUUGUAgCCGCCGCgaGuGCugCGa -5'
6741 5' -56 NC_001875.2 + 18613 0.66 0.855437
Target:  5'- aUUAACA-CGGCgcugauuccGGCGCUCAa-ACGCa -3'
miRNA:   3'- -AAUUGUaGCCG---------CCGCGAGUgcUGCGa -5'
6741 5' -56 NC_001875.2 + 111971 0.66 0.847401
Target:  5'- --cGCAaaCGGCGcccGCGC-CGCGACGCg -3'
miRNA:   3'- aauUGUa-GCCGC---CGCGaGUGCUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.