miRNA display CGI


Results 21 - 40 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 5' -56 NC_001875.2 + 41709 0.71 0.603441
Target:  5'- -gGGCGUaUGcGCGGCGCUgCGCGGCGUc -3'
miRNA:   3'- aaUUGUA-GC-CGCCGCGA-GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 98917 0.71 0.603441
Target:  5'- gUAGCucgCGGCGccgguuGCGCgugCGCGACGCg -3'
miRNA:   3'- aAUUGua-GCCGC------CGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 10452 0.71 0.613858
Target:  5'- uUUGACGcggcgCGGCGGCGCgcucagugaAUGGCGCUu -3'
miRNA:   3'- -AAUUGUa----GCCGCCGCGag-------UGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 114947 0.7 0.624288
Target:  5'- -cGACAUC-GCGGCGCcgcugCGCGuACGCa -3'
miRNA:   3'- aaUUGUAGcCGCCGCGa----GUGC-UGCGa -5'
6741 5' -56 NC_001875.2 + 68562 0.7 0.624288
Target:  5'- -cGGCggCGGCGGuCGCgcacCGCGugGCg -3'
miRNA:   3'- aaUUGuaGCCGCC-GCGa---GUGCugCGa -5'
6741 5' -56 NC_001875.2 + 85360 0.7 0.633681
Target:  5'- --cGCcgUGGCGGCGUUCGCGuuggcaaACGCc -3'
miRNA:   3'- aauUGuaGCCGCCGCGAGUGC-------UGCGa -5'
6741 5' -56 NC_001875.2 + 110000 0.7 0.634724
Target:  5'- ----gGUCGGUGGCGUUgACGcGCGCg -3'
miRNA:   3'- aauugUAGCCGCCGCGAgUGC-UGCGa -5'
6741 5' -56 NC_001875.2 + 96439 0.7 0.634724
Target:  5'- ----uGUCGGCGuCGCUCGCG-CGCg -3'
miRNA:   3'- aauugUAGCCGCcGCGAGUGCuGCGa -5'
6741 5' -56 NC_001875.2 + 80719 0.7 0.645159
Target:  5'- -cAGCGUCGaaauuuaCGGCGUgCACGACGCg -3'
miRNA:   3'- aaUUGUAGCc------GCCGCGaGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 771 0.7 0.645159
Target:  5'- -gGGCAgcugaCGGCGGCGCgcggaacguUCAUGGCGUUu -3'
miRNA:   3'- aaUUGUa----GCCGCCGCG---------AGUGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 99392 0.7 0.654541
Target:  5'- --cGCAcCGGCGGCGCcagcgggUCGCGcaGCGCa -3'
miRNA:   3'- aauUGUaGCCGCCGCG-------AGUGC--UGCGa -5'
6741 5' -56 NC_001875.2 + 74360 0.7 0.676362
Target:  5'- -aAACuagaCGGCGuGCGCggcCGCGGCGCg -3'
miRNA:   3'- aaUUGua--GCCGC-CGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 91229 0.7 0.676362
Target:  5'- -aGGCGcgUGGUGGCGCccacCACGGCGCc -3'
miRNA:   3'- aaUUGUa-GCCGCCGCGa---GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 39815 0.69 0.685669
Target:  5'- -gGACGUCGGCGGCcGaCUUugGcacggugugccacACGCUg -3'
miRNA:   3'- aaUUGUAGCCGCCG-C-GAGugC-------------UGCGA- -5'
6741 5' -56 NC_001875.2 + 122137 0.69 0.6867
Target:  5'- -cGGCG-CGGcCGGCGCgCACGACGg- -3'
miRNA:   3'- aaUUGUaGCC-GCCGCGaGUGCUGCga -5'
6741 5' -56 NC_001875.2 + 43599 0.69 0.6867
Target:  5'- -cGGCAgCGGCGGCGC--GCGcCGCUu -3'
miRNA:   3'- aaUUGUaGCCGCCGCGagUGCuGCGA- -5'
6741 5' -56 NC_001875.2 + 24023 0.69 0.696991
Target:  5'- -gGGCG-CGGgcuCGGCGgUCGCGugGCUg -3'
miRNA:   3'- aaUUGUaGCC---GCCGCgAGUGCugCGA- -5'
6741 5' -56 NC_001875.2 + 13177 0.69 0.696991
Target:  5'- -gAACA-CGGCGaGCGUUC-UGACGCa -3'
miRNA:   3'- aaUUGUaGCCGC-CGCGAGuGCUGCGa -5'
6741 5' -56 NC_001875.2 + 34808 0.69 0.707226
Target:  5'- --uGCGcCGGCaaGCGUUUACGACGCUg -3'
miRNA:   3'- aauUGUaGCCGc-CGCGAGUGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 91442 0.69 0.707226
Target:  5'- gUAGCugagCGGCGGCGCgug-GGCGCg -3'
miRNA:   3'- aAUUGua--GCCGCCGCGagugCUGCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.