miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 5' -56 NC_001875.2 + 114541 1.05 0.004209
Target:  5'- uUUAACAUCGGCGGCGCUCACGACGCUc -3'
miRNA:   3'- -AAUUGUAGCCGCCGCGAGUGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 67936 0.8 0.190665
Target:  5'- aUGAUG-CGGCGGCGC-CACGGCGCg -3'
miRNA:   3'- aAUUGUaGCCGCCGCGaGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 111143 0.76 0.311404
Target:  5'- --uACGUUGGCGGCgGCuuggugUCACGGCGCUg -3'
miRNA:   3'- aauUGUAGCCGCCG-CG------AGUGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 54591 0.76 0.349467
Target:  5'- ------cCGGCGGCGCgccCACGGCGCg -3'
miRNA:   3'- aauuguaGCCGCCGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 63446 0.75 0.357467
Target:  5'- -cGGCGUCGGCGGCcaGC-CGCGAgGCg -3'
miRNA:   3'- aaUUGUAGCCGCCG--CGaGUGCUgCGa -5'
6741 5' -56 NC_001875.2 + 61603 0.75 0.365594
Target:  5'- -gGGCGcCGGCGGCGCUUcgggcugugucgGCGGCGCc -3'
miRNA:   3'- aaUUGUaGCCGCCGCGAG------------UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 109126 0.75 0.373848
Target:  5'- -cGGCGaCGGCGGCGgUCuugGCGACGCa -3'
miRNA:   3'- aaUUGUaGCCGCCGCgAG---UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 69234 0.75 0.39073
Target:  5'- -gGACA-CGGCGGCGUcgaACGGCGCg -3'
miRNA:   3'- aaUUGUaGCCGCCGCGag-UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 124896 0.74 0.408103
Target:  5'- -cGAUGUC-GCGGCGCacgCACGACGCg -3'
miRNA:   3'- aaUUGUAGcCGCCGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 108569 0.74 0.408103
Target:  5'- -cGGCG-CGGCGGUGCUgGCGcuGCGCUg -3'
miRNA:   3'- aaUUGUaGCCGCCGCGAgUGC--UGCGA- -5'
6741 5' -56 NC_001875.2 + 21084 0.74 0.416969
Target:  5'- -aGACGcgCGGCGGCGgUCGCcGCGCUu -3'
miRNA:   3'- aaUUGUa-GCCGCCGCgAGUGcUGCGA- -5'
6741 5' -56 NC_001875.2 + 101962 0.74 0.416969
Target:  5'- -aGGCGcCGGUGGCGaaCGCGACGCa -3'
miRNA:   3'- aaUUGUaGCCGCCGCgaGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 21059 0.74 0.416969
Target:  5'- -cGugGUCGGCGGCGUUUugGGCa-- -3'
miRNA:   3'- aaUugUAGCCGCCGCGAGugCUGcga -5'
6741 5' -56 NC_001875.2 + 65794 0.73 0.472515
Target:  5'- -cGGCGUCGGCgcgcGGUGCcugCGCGGCGCc -3'
miRNA:   3'- aaUUGUAGCCG----CCGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 10878 0.73 0.482135
Target:  5'- --cGCGUCGGUGGCGCU-GCcGCGCa -3'
miRNA:   3'- aauUGUAGCCGCCGCGAgUGcUGCGa -5'
6741 5' -56 NC_001875.2 + 59912 0.73 0.491849
Target:  5'- -gAGCGcgCGGUcaaGGCGCUCGcCGACGCg -3'
miRNA:   3'- aaUUGUa-GCCG---CCGCGAGU-GCUGCGa -5'
6741 5' -56 NC_001875.2 + 77960 0.72 0.52151
Target:  5'- --cGCcgCGGCGGCGCgCACGAC-Ca -3'
miRNA:   3'- aauUGuaGCCGCCGCGaGUGCUGcGa -5'
6741 5' -56 NC_001875.2 + 28386 0.72 0.52151
Target:  5'- --uACGUC-GCGGCGUgCACGACGCc -3'
miRNA:   3'- aauUGUAGcCGCCGCGaGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 39075 0.72 0.531553
Target:  5'- -cGACAaUGGCGGCGUUUACGaauacgccaacGCGCUg -3'
miRNA:   3'- aaUUGUaGCCGCCGCGAGUGC-----------UGCGA- -5'
6741 5' -56 NC_001875.2 + 46180 0.71 0.593048
Target:  5'- --cGCGUUGGUGGCGUUCAaGACcGCUu -3'
miRNA:   3'- aauUGUAGCCGCCGCGAGUgCUG-CGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.