miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 5' -56 NC_001875.2 + 70983 0.68 0.737494
Target:  5'- uUUAGCGgugCGGUGGCGUcacuaaAUGACGCa -3'
miRNA:   3'- -AAUUGUa--GCCGCCGCGag----UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 110000 0.7 0.634724
Target:  5'- ----gGUCGGUGGCGUUgACGcGCGCg -3'
miRNA:   3'- aauugUAGCCGCCGCGAgUGC-UGCGa -5'
6741 5' -56 NC_001875.2 + 99392 0.7 0.654541
Target:  5'- --cGCAcCGGCGGCGCcagcgggUCGCGcaGCGCa -3'
miRNA:   3'- aauUGUaGCCGCCGCG-------AGUGC--UGCGa -5'
6741 5' -56 NC_001875.2 + 74360 0.7 0.676362
Target:  5'- -aAACuagaCGGCGuGCGCggcCGCGGCGCg -3'
miRNA:   3'- aaUUGua--GCCGC-CGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 39815 0.69 0.685669
Target:  5'- -gGACGUCGGCGGCcGaCUUugGcacggugugccacACGCUg -3'
miRNA:   3'- aaUUGUAGCCGCCG-C-GAGugC-------------UGCGA- -5'
6741 5' -56 NC_001875.2 + 122137 0.69 0.6867
Target:  5'- -cGGCG-CGGcCGGCGCgCACGACGg- -3'
miRNA:   3'- aaUUGUaGCC-GCCGCGaGUGCUGCga -5'
6741 5' -56 NC_001875.2 + 13177 0.69 0.696991
Target:  5'- -gAACA-CGGCGaGCGUUC-UGACGCa -3'
miRNA:   3'- aaUUGUaGCCGC-CGCGAGuGCUGCGa -5'
6741 5' -56 NC_001875.2 + 91442 0.69 0.707226
Target:  5'- gUAGCugagCGGCGGCGCgug-GGCGCg -3'
miRNA:   3'- aAUUGua--GCCGCCGCGagugCUGCGa -5'
6741 5' -56 NC_001875.2 + 53884 0.69 0.717394
Target:  5'- ----gGUCGuGCGGcCGC-CGCGGCGCa -3'
miRNA:   3'- aauugUAGC-CGCC-GCGaGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 85360 0.7 0.633681
Target:  5'- --cGCcgUGGCGGCGUUCGCGuuggcaaACGCc -3'
miRNA:   3'- aauUGuaGCCGCCGCGAGUGC-------UGCGa -5'
6741 5' -56 NC_001875.2 + 68562 0.7 0.624288
Target:  5'- -cGGCggCGGCGGuCGCgcacCGCGugGCg -3'
miRNA:   3'- aaUUGuaGCCGCC-GCGa---GUGCugCGa -5'
6741 5' -56 NC_001875.2 + 114947 0.7 0.624288
Target:  5'- -cGACAUC-GCGGCGCcgcugCGCGuACGCa -3'
miRNA:   3'- aaUUGUAGcCGCCGCGa----GUGC-UGCGa -5'
6741 5' -56 NC_001875.2 + 54591 0.76 0.349467
Target:  5'- ------cCGGCGGCGCgccCACGGCGCg -3'
miRNA:   3'- aauuguaGCCGCCGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 63446 0.75 0.357467
Target:  5'- -cGGCGUCGGCGGCcaGC-CGCGAgGCg -3'
miRNA:   3'- aaUUGUAGCCGCCG--CGaGUGCUgCGa -5'
6741 5' -56 NC_001875.2 + 109126 0.75 0.373848
Target:  5'- -cGGCGaCGGCGGCGgUCuugGCGACGCa -3'
miRNA:   3'- aaUUGUaGCCGCCGCgAG---UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 108569 0.74 0.408103
Target:  5'- -cGGCG-CGGCGGUGCUgGCGcuGCGCUg -3'
miRNA:   3'- aaUUGUaGCCGCCGCGAgUGC--UGCGA- -5'
6741 5' -56 NC_001875.2 + 10878 0.73 0.482135
Target:  5'- --cGCGUCGGUGGCGCU-GCcGCGCa -3'
miRNA:   3'- aauUGUAGCCGCCGCGAgUGcUGCGa -5'
6741 5' -56 NC_001875.2 + 46180 0.71 0.593048
Target:  5'- --cGCGUUGGUGGCGUUCAaGACcGCUu -3'
miRNA:   3'- aauUGUAGCCGCCGCGAGUgCUG-CGA- -5'
6741 5' -56 NC_001875.2 + 41709 0.71 0.603441
Target:  5'- -gGGCGUaUGcGCGGCGCUgCGCGGCGUc -3'
miRNA:   3'- aaUUGUA-GC-CGCCGCGA-GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 10452 0.71 0.613858
Target:  5'- uUUGACGcggcgCGGCGGCGCgcucagugaAUGGCGCUu -3'
miRNA:   3'- -AAUUGUa----GCCGCCGCGag-------UGCUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.