miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 5' -56 NC_001875.2 + 113297 0.66 0.839162
Target:  5'- -cAAUGUCGGUGGCGaugccaaaCACGAgCGCg -3'
miRNA:   3'- aaUUGUAGCCGCCGCga------GUGCU-GCGa -5'
6741 5' -56 NC_001875.2 + 75388 0.66 0.863263
Target:  5'- aUGGCGUCGGCgauGGCGU---CGGCGUUg -3'
miRNA:   3'- aAUUGUAGCCG---CCGCGaguGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 75286 0.66 0.863263
Target:  5'- aUGGCGUCGGCgauGGCGU---CGGCGUUg -3'
miRNA:   3'- aAUUGUAGCCG---CCGCGaguGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 78150 0.66 0.863263
Target:  5'- gUGACAaacgUGuuGGCGCUgCGCGGCGCc -3'
miRNA:   3'- aAUUGUa---GCcgCCGCGA-GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 75647 0.66 0.863263
Target:  5'- -cGGCGUCGGCgauGGCGUUgGCGucgGCGUc -3'
miRNA:   3'- aaUUGUAGCCG---CCGCGAgUGC---UGCGa -5'
6741 5' -56 NC_001875.2 + 37102 0.66 0.863263
Target:  5'- --cGCGUgGGUGuGCGggCGCGGCGCc -3'
miRNA:   3'- aauUGUAgCCGC-CGCgaGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 16939 0.66 0.839162
Target:  5'- --cGCAUCGGCGcguuGCGC-CACGugaccaccaGCGCUu -3'
miRNA:   3'- aauUGUAGCCGC----CGCGaGUGC---------UGCGA- -5'
6741 5' -56 NC_001875.2 + 36659 0.66 0.839162
Target:  5'- --cGCGUCGuGCGcGCugaGCUCGgGGCGCg -3'
miRNA:   3'- aauUGUAGC-CGC-CG---CGAGUgCUGCGa -5'
6741 5' -56 NC_001875.2 + 110170 0.66 0.839162
Target:  5'- ---uCGUCGGgCGGCGUcgCACuGCGCUc -3'
miRNA:   3'- aauuGUAGCC-GCCGCGa-GUGcUGCGA- -5'
6741 5' -56 NC_001875.2 + 113678 0.66 0.87826
Target:  5'- --cACAgUGGCGGCG-UCGCG-CGCg -3'
miRNA:   3'- aauUGUaGCCGCCGCgAGUGCuGCGa -5'
6741 5' -56 NC_001875.2 + 6944 0.66 0.863263
Target:  5'- --cGCGUCGuGCGuGCGCcgcgacaucgcCACGGCGCg -3'
miRNA:   3'- aauUGUAGC-CGC-CGCGa----------GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 119047 0.66 0.855437
Target:  5'- -aGACuggucCGGCGuGCGCaugugCGCGGCGCc -3'
miRNA:   3'- aaUUGua---GCCGC-CGCGa----GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 51319 0.66 0.847401
Target:  5'- -gGGCGUCGGCca-GCUCGC-ACGCg -3'
miRNA:   3'- aaUUGUAGCCGccgCGAGUGcUGCGa -5'
6741 5' -56 NC_001875.2 + 7928 0.66 0.847401
Target:  5'- -aGACG-CGGUGGCGCUCAauuCGAacgGCc -3'
miRNA:   3'- aaUUGUaGCCGCCGCGAGU---GCUg--CGa -5'
6741 5' -56 NC_001875.2 + 21237 0.66 0.855437
Target:  5'- -cAACAccagUUGGCgaagcugguccaGGCGCgcgCGCGGCGCg -3'
miRNA:   3'- aaUUGU----AGCCG------------CCGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 98894 0.66 0.855437
Target:  5'- -cGACAUggCGaGCGGCGCgCAaacUGACGCg -3'
miRNA:   3'- aaUUGUA--GC-CGCCGCGaGU---GCUGCGa -5'
6741 5' -56 NC_001875.2 + 113609 0.66 0.839162
Target:  5'- ----aGUCGGCGGCGggcCGCGGCGg- -3'
miRNA:   3'- aauugUAGCCGCCGCga-GUGCUGCga -5'
6741 5' -56 NC_001875.2 + 90455 0.66 0.863263
Target:  5'- -aGGCGUCGGUGG-GCggCGCGuaauuuCGCUg -3'
miRNA:   3'- aaUUGUAGCCGCCgCGa-GUGCu-----GCGA- -5'
6741 5' -56 NC_001875.2 + 111971 0.66 0.847401
Target:  5'- --cGCAaaCGGCGcccGCGC-CGCGACGCg -3'
miRNA:   3'- aauUGUa-GCCGC---CGCGaGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 75346 0.66 0.863263
Target:  5'- aUGGCGUCGGCgauGGCGU---CGGCGUUg -3'
miRNA:   3'- aAUUGUAGCCG---CCGCGaguGCUGCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.