miRNA display CGI


Results 1 - 20 of 144 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 5' -56 NC_001875.2 + 771 0.7 0.645159
Target:  5'- -gGGCAgcugaCGGCGGCGCgcggaacguUCAUGGCGUUu -3'
miRNA:   3'- aaUUGUa----GCCGCCGCG---------AGUGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 2665 0.68 0.737494
Target:  5'- -cGGCGcCGGCGGCGC-CuggggcaacuGCGGCGCc -3'
miRNA:   3'- aaUUGUaGCCGCCGCGaG----------UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 2804 0.68 0.785903
Target:  5'- aUGAgGUCuGGCGaGCGCgagCGCGGCGaCg -3'
miRNA:   3'- aAUUgUAG-CCGC-CGCGa--GUGCUGC-Ga -5'
6741 5' -56 NC_001875.2 + 3101 0.68 0.757212
Target:  5'- --cGCGcCGGgGcGCgGCUCGCGGCGCa -3'
miRNA:   3'- aauUGUaGCCgC-CG-CGAGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 3201 0.67 0.822104
Target:  5'- -aGACAgguugCGGCGGCGgUUggAUGGCGUg -3'
miRNA:   3'- aaUUGUa----GCCGCCGCgAG--UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 6944 0.66 0.863263
Target:  5'- --cGCGUCGuGCGuGCGCcgcgacaucgcCACGGCGCg -3'
miRNA:   3'- aauUGUAGC-CGC-CGCGa----------GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 7928 0.66 0.847401
Target:  5'- -aGACG-CGGUGGCGCUCAauuCGAacgGCc -3'
miRNA:   3'- aaUUGUaGCCGCCGCGAGU---GCUg--CGa -5'
6741 5' -56 NC_001875.2 + 10452 0.71 0.613858
Target:  5'- uUUGACGcggcgCGGCGGCGCgcucagugaAUGGCGCUu -3'
miRNA:   3'- -AAUUGUa----GCCGCCGCGag-------UGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 10878 0.73 0.482135
Target:  5'- --cGCGUCGGUGGCGCU-GCcGCGCa -3'
miRNA:   3'- aauUGUAGCCGCCGCGAgUGcUGCGa -5'
6741 5' -56 NC_001875.2 + 10950 0.67 0.795192
Target:  5'- -aAACGU-GGUGGCGUUUGUGACGCa -3'
miRNA:   3'- aaUUGUAgCCGCCGCGAGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 13177 0.69 0.696991
Target:  5'- -gAACA-CGGCGaGCGUUC-UGACGCa -3'
miRNA:   3'- aaUUGUaGCCGC-CGCGAGuGCUGCGa -5'
6741 5' -56 NC_001875.2 + 13903 0.68 0.757212
Target:  5'- -aAACG-CGGCGGCGCgCACGcCGg- -3'
miRNA:   3'- aaUUGUaGCCGCCGCGaGUGCuGCga -5'
6741 5' -56 NC_001875.2 + 16939 0.66 0.839162
Target:  5'- --cGCAUCGGCGcguuGCGC-CACGugaccaccaGCGCUu -3'
miRNA:   3'- aauUGUAGCCGC----CGCGaGUGC---------UGCGA- -5'
6741 5' -56 NC_001875.2 + 18613 0.66 0.855437
Target:  5'- aUUAACA-CGGCgcugauuccGGCGCUCAa-ACGCa -3'
miRNA:   3'- -AAUUGUaGCCG---------CCGCGAGUgcUGCGa -5'
6741 5' -56 NC_001875.2 + 19859 0.68 0.757212
Target:  5'- -aGAC-UCGGCcGCG-UCGCGGCGCg -3'
miRNA:   3'- aaUUGuAGCCGcCGCgAGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 21059 0.74 0.416969
Target:  5'- -cGugGUCGGCGGCGUUUugGGCa-- -3'
miRNA:   3'- aaUugUAGCCGCCGCGAGugCUGcga -5'
6741 5' -56 NC_001875.2 + 21084 0.74 0.416969
Target:  5'- -aGACGcgCGGCGGCGgUCGCcGCGCUu -3'
miRNA:   3'- aaUUGUa-GCCGCCGCgAGUGcUGCGA- -5'
6741 5' -56 NC_001875.2 + 21237 0.66 0.855437
Target:  5'- -cAACAccagUUGGCgaagcugguccaGGCGCgcgCGCGGCGCg -3'
miRNA:   3'- aaUUGU----AGCCG------------CCGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 21949 0.66 0.863263
Target:  5'- -aAACGUUcGCGGCGCggggauggGCGGCGCc -3'
miRNA:   3'- aaUUGUAGcCGCCGCGag------UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 23171 0.67 0.813301
Target:  5'- -gGGCA-CGGCGGCuGCgggCACGGcCGUUg -3'
miRNA:   3'- aaUUGUaGCCGCCG-CGa--GUGCU-GCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.