miRNA display CGI


Results 1 - 20 of 144 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6741 5' -56 NC_001875.2 + 131746 0.66 0.863263
Target:  5'- --uGCAUugggcCGGCGGCGgaUCggGCGGCGCg -3'
miRNA:   3'- aauUGUA-----GCCGCCGCg-AG--UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 130107 0.69 0.717394
Target:  5'- aUGGCGgcggCGGCGGCGCgaccggugUCGCGccCGCa -3'
miRNA:   3'- aAUUGUa---GCCGCCGCG--------AGUGCu-GCGa -5'
6741 5' -56 NC_001875.2 + 129962 0.66 0.863263
Target:  5'- aUUGGCggCGGCGGCGgCg-GCGGCGg- -3'
miRNA:   3'- -AAUUGuaGCCGCCGC-GagUGCUGCga -5'
6741 5' -56 NC_001875.2 + 129551 0.67 0.795192
Target:  5'- --cGCGgccaCGGCGcGCGCgcaUCACGACGUc -3'
miRNA:   3'- aauUGUa---GCCGC-CGCG---AGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 126023 0.66 0.86249
Target:  5'- ----gAUCGGCGGCGCUgGCaGucuacuaccuuauGCGCa -3'
miRNA:   3'- aauugUAGCCGCCGCGAgUG-C-------------UGCGa -5'
6741 5' -56 NC_001875.2 + 124896 0.74 0.408103
Target:  5'- -cGAUGUC-GCGGCGCacgCACGACGCg -3'
miRNA:   3'- aaUUGUAGcCGCCGCGa--GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 122137 0.69 0.6867
Target:  5'- -cGGCG-CGGcCGGCGCgCACGACGg- -3'
miRNA:   3'- aaUUGUaGCC-GCCGCGaGUGCUGCga -5'
6741 5' -56 NC_001875.2 + 122111 0.67 0.830727
Target:  5'- -cGACAgucgcCGGCuGGCGUUCAUGACa-- -3'
miRNA:   3'- aaUUGUa----GCCG-CCGCGAGUGCUGcga -5'
6741 5' -56 NC_001875.2 + 120646 0.66 0.855437
Target:  5'- -cGGCG-CGGCGucGUGCUCcacaACGGCGCg -3'
miRNA:   3'- aaUUGUaGCCGC--CGCGAG----UGCUGCGa -5'
6741 5' -56 NC_001875.2 + 120286 0.67 0.830727
Target:  5'- --cGCuUCGGCGGCGCgUACGAaauugGCg -3'
miRNA:   3'- aauUGuAGCCGCCGCGaGUGCUg----CGa -5'
6741 5' -56 NC_001875.2 + 119401 0.66 0.868613
Target:  5'- aUGGCGUCcaccGCGGCGCgCACGcaacggccugcuugGCGCg -3'
miRNA:   3'- aAUUGUAGc---CGCCGCGaGUGC--------------UGCGa -5'
6741 5' -56 NC_001875.2 + 119047 0.66 0.855437
Target:  5'- -aGACuggucCGGCGuGCGCaugugCGCGGCGCc -3'
miRNA:   3'- aaUUGua---GCCGC-CGCGa----GUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 115061 0.68 0.747406
Target:  5'- -aAACAUgGugaagcuuuacGCGGCGCgcagUCACGACGCc -3'
miRNA:   3'- aaUUGUAgC-----------CGCCGCG----AGUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 114968 0.67 0.795192
Target:  5'- -cGAUAgaagCGGUcGCGCUgGCGGCGCc -3'
miRNA:   3'- aaUUGUa---GCCGcCGCGAgUGCUGCGa -5'
6741 5' -56 NC_001875.2 + 114947 0.7 0.624288
Target:  5'- -cGACAUC-GCGGCGCcgcugCGCGuACGCa -3'
miRNA:   3'- aaUUGUAGcCGCCGCGa----GUGC-UGCGa -5'
6741 5' -56 NC_001875.2 + 114541 1.05 0.004209
Target:  5'- uUUAACAUCGGCGGCGCUCACGACGCUc -3'
miRNA:   3'- -AAUUGUAGCCGCCGCGAGUGCUGCGA- -5'
6741 5' -56 NC_001875.2 + 113678 0.66 0.87826
Target:  5'- --cACAgUGGCGGCG-UCGCG-CGCg -3'
miRNA:   3'- aauUGUaGCCGCCGCgAGUGCuGCGa -5'
6741 5' -56 NC_001875.2 + 113609 0.66 0.839162
Target:  5'- ----aGUCGGCGGCGggcCGCGGCGg- -3'
miRNA:   3'- aauugUAGCCGCCGCga-GUGCUGCga -5'
6741 5' -56 NC_001875.2 + 113297 0.66 0.839162
Target:  5'- -cAAUGUCGGUGGCGaugccaaaCACGAgCGCg -3'
miRNA:   3'- aaUUGUAGCCGCCGCga------GUGCU-GCGa -5'
6741 5' -56 NC_001875.2 + 111971 0.66 0.847401
Target:  5'- --cGCAaaCGGCGcccGCGC-CGCGACGCg -3'
miRNA:   3'- aauUGUa-GCCGC---CGCGaGUGCUGCGa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.