Results 1 - 20 of 144 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6741 | 5' | -56 | NC_001875.2 | + | 114541 | 1.05 | 0.004209 |
Target: 5'- uUUAACAUCGGCGGCGCUCACGACGCUc -3' miRNA: 3'- -AAUUGUAGCCGCCGCGAGUGCUGCGA- -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 91229 | 0.7 | 0.676362 |
Target: 5'- -aGGCGcgUGGUGGCGCccacCACGGCGCc -3' miRNA: 3'- aaUUGUa-GCCGCCGCGa---GUGCUGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 24023 | 0.69 | 0.696991 |
Target: 5'- -gGGCG-CGGgcuCGGCGgUCGCGugGCUg -3' miRNA: 3'- aaUUGUaGCC---GCCGCgAGUGCugCGA- -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 113678 | 0.66 | 0.87826 |
Target: 5'- --cACAgUGGCGGCG-UCGCG-CGCg -3' miRNA: 3'- aauUGUaGCCGCCGCgAGUGCuGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 124896 | 0.74 | 0.408103 |
Target: 5'- -cGAUGUC-GCGGCGCacgCACGACGCg -3' miRNA: 3'- aaUUGUAGcCGCCGCGa--GUGCUGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 21084 | 0.74 | 0.416969 |
Target: 5'- -aGACGcgCGGCGGCGgUCGCcGCGCUu -3' miRNA: 3'- aaUUGUa-GCCGCCGCgAGUGcUGCGA- -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 101962 | 0.74 | 0.416969 |
Target: 5'- -aGGCGcCGGUGGCGaaCGCGACGCa -3' miRNA: 3'- aaUUGUaGCCGCCGCgaGUGCUGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 65794 | 0.73 | 0.472515 |
Target: 5'- -cGGCGUCGGCgcgcGGUGCcugCGCGGCGCc -3' miRNA: 3'- aaUUGUAGCCG----CCGCGa--GUGCUGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 77960 | 0.72 | 0.52151 |
Target: 5'- --cGCcgCGGCGGCGCgCACGAC-Ca -3' miRNA: 3'- aauUGuaGCCGCCGCGaGUGCUGcGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 80719 | 0.7 | 0.645159 |
Target: 5'- -cAGCGUCGaaauuuaCGGCGUgCACGACGCg -3' miRNA: 3'- aaUUGUAGCc------GCCGCGaGUGCUGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 98917 | 0.71 | 0.603441 |
Target: 5'- gUAGCucgCGGCGccgguuGCGCgugCGCGACGCg -3' miRNA: 3'- aAUUGua-GCCGC------CGCGa--GUGCUGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 28386 | 0.72 | 0.52151 |
Target: 5'- --uACGUC-GCGGCGUgCACGACGCc -3' miRNA: 3'- aauUGUAGcCGCCGCGaGUGCUGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 111143 | 0.76 | 0.311404 |
Target: 5'- --uACGUUGGCGGCgGCuuggugUCACGGCGCUg -3' miRNA: 3'- aauUGUAGCCGCCG-CG------AGUGCUGCGA- -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 96439 | 0.7 | 0.634724 |
Target: 5'- ----uGUCGGCGuCGCUCGCG-CGCg -3' miRNA: 3'- aauugUAGCCGCcGCGAGUGCuGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 61603 | 0.75 | 0.365594 |
Target: 5'- -gGGCGcCGGCGGCGCUUcgggcugugucgGCGGCGCc -3' miRNA: 3'- aaUUGUaGCCGCCGCGAG------------UGCUGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 59912 | 0.73 | 0.491849 |
Target: 5'- -gAGCGcgCGGUcaaGGCGCUCGcCGACGCg -3' miRNA: 3'- aaUUGUa-GCCG---CCGCGAGU-GCUGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 771 | 0.7 | 0.645159 |
Target: 5'- -gGGCAgcugaCGGCGGCGCgcggaacguUCAUGGCGUUu -3' miRNA: 3'- aaUUGUa----GCCGCCGCG---------AGUGCUGCGA- -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 43599 | 0.69 | 0.6867 |
Target: 5'- -cGGCAgCGGCGGCGC--GCGcCGCUu -3' miRNA: 3'- aaUUGUaGCCGCCGCGagUGCuGCGA- -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 69234 | 0.75 | 0.39073 |
Target: 5'- -gGACA-CGGCGGCGUcgaACGGCGCg -3' miRNA: 3'- aaUUGUaGCCGCCGCGag-UGCUGCGa -5' |
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6741 | 5' | -56 | NC_001875.2 | + | 21059 | 0.74 | 0.416969 |
Target: 5'- -cGugGUCGGCGGCGUUUugGGCa-- -3' miRNA: 3'- aaUugUAGCCGCCGCGAGugCUGcga -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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