miRNA display CGI


Results 41 - 60 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 3' -54.6 NC_001875.2 + 37097 0.67 0.909478
Target:  5'- aCCgCCgcgugggugUGCGGGcGCGGCGCCG-CGCCGg -3'
miRNA:   3'- -GG-GG---------AUGUUU-UGCCGUGGCaGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 4513 0.67 0.903232
Target:  5'- uCCgCUGCGGAaaGCGGCGCac-CGCCGg -3'
miRNA:   3'- -GGgGAUGUUU--UGCCGUGgcaGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 88986 0.67 0.903232
Target:  5'- -aCCUGCGccuGCGGCgcGCCGgauuugcgCGCUACg -3'
miRNA:   3'- ggGGAUGUuu-UGCCG--UGGCa-------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 113339 0.67 0.903232
Target:  5'- uUCgUGCGGcgggucgggcGCGGCugCGUCGCUGCg -3'
miRNA:   3'- gGGgAUGUUu---------UGCCGugGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 62067 0.67 0.903232
Target:  5'- aCUCa--AAAAC-GCGCCGUCGCCAa -3'
miRNA:   3'- gGGGaugUUUUGcCGUGGCAGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 119884 0.67 0.896747
Target:  5'- gCUUCUGCAAcGCGcCGCCGgUCGCgCGCa -3'
miRNA:   3'- -GGGGAUGUUuUGCcGUGGC-AGCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 32079 0.67 0.896747
Target:  5'- gCCC-GCAAcAACGGCGCCaaaCGCaCACa -3'
miRNA:   3'- gGGGaUGUU-UUGCCGUGGca-GCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 82975 0.67 0.896747
Target:  5'- --aCUACGuuuuccucGCGGCGCCGcUCGUCGCc -3'
miRNA:   3'- gggGAUGUuu------UGCCGUGGC-AGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 16384 0.67 0.896747
Target:  5'- gCCCgCUAgcuCAAcGCGGUAggugcgguguUCGUCGCCGCc -3'
miRNA:   3'- -GGG-GAU---GUUuUGCCGU----------GGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 82371 0.67 0.896747
Target:  5'- aCUCgggcgcgcGCGGAaccACGGCGCCGUCcaccgucaGCCGCg -3'
miRNA:   3'- gGGGa-------UGUUU---UGCCGUGGCAG--------CGGUG- -5'
6742 3' -54.6 NC_001875.2 + 110742 0.67 0.896747
Target:  5'- gCgCgUGCAGuuuaagcGCGGCgACCGcCGCCGCg -3'
miRNA:   3'- -GgGgAUGUUu------UGCCG-UGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 110297 0.67 0.896747
Target:  5'- gCCCCgucgcCGAGACGGUGCUGgacUGCgGCa -3'
miRNA:   3'- -GGGGau---GUUUUGCCGUGGCa--GCGgUG- -5'
6742 3' -54.6 NC_001875.2 + 19936 0.67 0.892742
Target:  5'- gCCCgUACAcgGAGCGGCcggcgcgacgguccgGCCGgCGCCuCg -3'
miRNA:   3'- -GGGgAUGU--UUUGCCG---------------UGGCaGCGGuG- -5'
6742 3' -54.6 NC_001875.2 + 98132 0.67 0.890708
Target:  5'- aCCCCUGuucgguggacccgauCAGcgGGCGGCGCaCGUCGggccguuuguuuuaCCACg -3'
miRNA:   3'- -GGGGAU---------------GUU--UUGCCGUG-GCAGC--------------GGUG- -5'
6742 3' -54.6 NC_001875.2 + 19763 0.67 0.890025
Target:  5'- -gCUUACAAGAgGGC-CCGgcaGCCGCc -3'
miRNA:   3'- ggGGAUGUUUUgCCGuGGCag-CGGUG- -5'
6742 3' -54.6 NC_001875.2 + 880 0.67 0.890025
Target:  5'- aCCaCUUugGgcgcgaGAACGGCGCaGUCGgCCACg -3'
miRNA:   3'- -GG-GGAugU------UUUGCCGUGgCAGC-GGUG- -5'
6742 3' -54.6 NC_001875.2 + 21161 0.67 0.890025
Target:  5'- uCUCUUAUAAAugGCGGCGCUGgucaaGCCAa -3'
miRNA:   3'- -GGGGAUGUUU--UGCCGUGGCag---CGGUg -5'
6742 3' -54.6 NC_001875.2 + 41803 0.67 0.890025
Target:  5'- uUCCgcCGGcACGcGCGCCGgCGCCGCg -3'
miRNA:   3'- gGGGauGUUuUGC-CGUGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 74850 0.67 0.883071
Target:  5'- gCCgCUGCu---CGGCaaaACCGUCGUgGCg -3'
miRNA:   3'- -GGgGAUGuuuuGCCG---UGGCAGCGgUG- -5'
6742 3' -54.6 NC_001875.2 + 101620 0.67 0.883071
Target:  5'- aCCaCgUACAAAGUGGUcgccacaacgGCCGUCGCgGCg -3'
miRNA:   3'- -GG-GgAUGUUUUGCCG----------UGGCAGCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.