miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 3' -54.6 NC_001875.2 + 9110 0.66 0.932029
Target:  5'- aCCCCgccACGAAcuCGGaCGCCGUggacucgcgCGCCAg -3'
miRNA:   3'- -GGGGa--UGUUUu-GCC-GUGGCA---------GCGGUg -5'
6742 3' -54.6 NC_001875.2 + 103934 0.66 0.932029
Target:  5'- -aCUU-CAuAACGGCGUCGUCGCCGa -3'
miRNA:   3'- ggGGAuGUuUUGCCGUGGCAGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 123717 0.66 0.932029
Target:  5'- -aCCUACAAGuACaGCAgCGUgGCCAa -3'
miRNA:   3'- ggGGAUGUUU-UGcCGUgGCAgCGGUg -5'
6742 3' -54.6 NC_001875.2 + 90612 0.66 0.932029
Target:  5'- uUCCUUGaugaGGGAcCGGUugCG-CGCCACa -3'
miRNA:   3'- -GGGGAUg---UUUU-GCCGugGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 77376 0.66 0.928896
Target:  5'- gUCCUGCcgcacacgcuguGCGGCGCCGcggcuaacgacCGCCACg -3'
miRNA:   3'- gGGGAUGuuu---------UGCCGUGGCa----------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 109014 0.66 0.926758
Target:  5'- gUCgUGCcgccGACGGUGCCGUCGgaCCGCa -3'
miRNA:   3'- gGGgAUGuu--UUGCCGUGGCAGC--GGUG- -5'
6742 3' -54.6 NC_001875.2 + 71538 0.66 0.926758
Target:  5'- aCCgCUGCGAcGCGucgccuGCAgUGUCGCCAa -3'
miRNA:   3'- -GGgGAUGUUuUGC------CGUgGCAGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 130846 0.66 0.926758
Target:  5'- gCCaUACAGGAuuagaaacguUGGCGagCGUCGCCGCg -3'
miRNA:   3'- gGGgAUGUUUU----------GCCGUg-GCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 56820 0.66 0.926758
Target:  5'- aCUCguucACGGccGACGGCugCGU-GCCGCa -3'
miRNA:   3'- gGGGa---UGUU--UUGCCGugGCAgCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 42352 0.66 0.921243
Target:  5'- uCCCaaGCGGuuGCGGCGCgaGggCGCCACu -3'
miRNA:   3'- -GGGgaUGUUu-UGCCGUGg-Ca-GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 38497 0.66 0.921243
Target:  5'- cUCCCgacgACAAggUGGUGCUGgUGUCGCa -3'
miRNA:   3'- -GGGGa---UGUUuuGCCGUGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 69223 0.66 0.91954
Target:  5'- aCCUUGCAuucggacACGGCGgCGUCgaacggcgcgcuggGCCGCg -3'
miRNA:   3'- gGGGAUGUuu-----UGCCGUgGCAG--------------CGGUG- -5'
6742 3' -54.6 NC_001875.2 + 103024 0.67 0.915482
Target:  5'- aCCCU----GACGGuCACCGgcUCGCuCACg -3'
miRNA:   3'- gGGGAuguuUUGCC-GUGGC--AGCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 113380 0.67 0.915482
Target:  5'- gCCCgguCA--GCGGCGCgCGauucgcgCGCCACg -3'
miRNA:   3'- gGGGau-GUuuUGCCGUG-GCa------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 20749 0.67 0.915482
Target:  5'- gCCgCaACAAAagguuuucACGGCGCCGgcgUCGuCCACg -3'
miRNA:   3'- -GGgGaUGUUU--------UGCCGUGGC---AGC-GGUG- -5'
6742 3' -54.6 NC_001875.2 + 83384 0.67 0.914893
Target:  5'- -aCUUGCAAAcaguaucGCGGguUgGUCGCCAUg -3'
miRNA:   3'- ggGGAUGUUU-------UGCCguGgCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 88213 0.67 0.914301
Target:  5'- aCCUCguccgucauuggGCAAAaacggcgcaaGCGGCGCgCGcCGCCGCu -3'
miRNA:   3'- -GGGGa-----------UGUUU----------UGCCGUG-GCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 100247 0.67 0.909478
Target:  5'- gCCC-ACGGcACGGCGCCGgacaCCACc -3'
miRNA:   3'- gGGGaUGUUuUGCCGUGGCagc-GGUG- -5'
6742 3' -54.6 NC_001875.2 + 124765 0.67 0.909478
Target:  5'- -gUCUGCGcacAGGcCGGUGgCGUCGCCGCa -3'
miRNA:   3'- ggGGAUGU---UUU-GCCGUgGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 37097 0.67 0.909478
Target:  5'- aCCgCCgcgugggugUGCGGGcGCGGCGCCG-CGCCGg -3'
miRNA:   3'- -GG-GG---------AUGUUU-UGCCGUGGCaGCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.