miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 3' -54.6 NC_001875.2 + 21161 0.67 0.890025
Target:  5'- uCUCUUAUAAAugGCGGCGCUGgucaaGCCAa -3'
miRNA:   3'- -GGGGAUGUUU--UGCCGUGGCag---CGGUg -5'
6742 3' -54.6 NC_001875.2 + 22705 0.68 0.853024
Target:  5'- -gCCUAucugcgucgcCAAGACcGcCGCCGUCGCCGCc -3'
miRNA:   3'- ggGGAU----------GUUUUGcC-GUGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 22817 0.77 0.382611
Target:  5'- gCCgUGCGGuccGACGGCACCGUCgGCgGCa -3'
miRNA:   3'- gGGgAUGUU---UUGCCGUGGCAG-CGgUG- -5'
6742 3' -54.6 NC_001875.2 + 23071 0.69 0.792854
Target:  5'- gCCCUggACAAcacCGGCAacCCG-CGCCGCg -3'
miRNA:   3'- gGGGA--UGUUuu-GCCGU--GGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 23199 0.69 0.810918
Target:  5'- gCCCaACAAGGuaaucaGGCACCGcaagUUGCCACu -3'
miRNA:   3'- gGGGaUGUUUUg-----CCGUGGC----AGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 27074 0.68 0.86773
Target:  5'- aCCCUugAuaucugaGAuuguCGGCGCCGaCGcCCACg -3'
miRNA:   3'- gGGGAugU-------UUu---GCCGUGGCaGC-GGUG- -5'
6742 3' -54.6 NC_001875.2 + 28843 0.66 0.941836
Target:  5'- -gCCgacACGGAcgGCgGGCACuUGUCGCCGCu -3'
miRNA:   3'- ggGGa--UGUUU--UG-CCGUG-GCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 29403 0.81 0.245415
Target:  5'- aCCUUGCAAAACGcGCAgcgcaccUCGUCGCCGCg -3'
miRNA:   3'- gGGGAUGUUUUGC-CGU-------GGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 30177 0.69 0.828317
Target:  5'- gCUgUUugAAAGCcgugauuuGGCGCCGuUCGCCGCg -3'
miRNA:   3'- -GGgGAugUUUUG--------CCGUGGC-AGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 32079 0.67 0.896747
Target:  5'- gCCC-GCAAcAACGGCGCCaaaCGCaCACa -3'
miRNA:   3'- gGGGaUGUU-UUGCCGUGGca-GCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 32960 0.66 0.939953
Target:  5'- uUCCC---GAAACGGCGCCcgcgcacauuagCGCCACc -3'
miRNA:   3'- -GGGGaugUUUUGCCGUGGca----------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 33024 0.77 0.374286
Target:  5'- cCCCCUuaagcGCAGcgcGGCgGGCGCCG-CGCCGCg -3'
miRNA:   3'- -GGGGA-----UGUU---UUG-CCGUGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 33085 0.77 0.399628
Target:  5'- -aCUUugAugGCGGCGCCGUCGCgGCu -3'
miRNA:   3'- ggGGAugUuuUGCCGUGGCAGCGgUG- -5'
6742 3' -54.6 NC_001875.2 + 33875 0.69 0.828317
Target:  5'- -gCCgGCAGAACGGCGuuuCgGUgGCCGCg -3'
miRNA:   3'- ggGGaUGUUUUGCCGU---GgCAgCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 33920 0.71 0.695121
Target:  5'- aCCCCUcgucgaaacgcaGCGGGcguCGGCGCCGaCGcCCGCa -3'
miRNA:   3'- -GGGGA------------UGUUUu--GCCGUGGCaGC-GGUG- -5'
6742 3' -54.6 NC_001875.2 + 36274 0.69 0.836746
Target:  5'- aCgCCUGCAcAACGgaGCGCCaaugCGCCGCa -3'
miRNA:   3'- -GgGGAUGUuUUGC--CGUGGca--GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 37097 0.67 0.909478
Target:  5'- aCCgCCgcgugggugUGCGGGcGCGGCGCCG-CGCCGg -3'
miRNA:   3'- -GG-GG---------AUGUUU-UGCCGUGGCaGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 37862 0.7 0.755018
Target:  5'- aCCacaaacaUUACAAAACGGCggGCCG-CGCCAg -3'
miRNA:   3'- -GGg------GAUGUUUUGCCG--UGGCaGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 38497 0.66 0.921243
Target:  5'- cUCCCgacgACAAggUGGUGCUGgUGUCGCa -3'
miRNA:   3'- -GGGGa---UGUUuuGCCGUGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 39034 0.66 0.937054
Target:  5'- aCCUCgGCAucggcGGCGGCGCUGUa-CCGCa -3'
miRNA:   3'- -GGGGaUGUu----UUGCCGUGGCAgcGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.