miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 3' -54.6 NC_001875.2 + 149 0.68 0.868483
Target:  5'- --aCUGCAAGGCaGGCACgCGgCGCCAa -3'
miRNA:   3'- gggGAUGUUUUG-CCGUG-GCaGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 880 0.67 0.890025
Target:  5'- aCCaCUUugGgcgcgaGAACGGCGCaGUCGgCCACg -3'
miRNA:   3'- -GG-GGAugU------UUUGCCGUGgCAGC-GGUG- -5'
6742 3' -54.6 NC_001875.2 + 974 0.68 0.868483
Target:  5'- uUCUUGCAc-GCGGCGaCGcUCGCCACg -3'
miRNA:   3'- gGGGAUGUuuUGCCGUgGC-AGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 2654 0.69 0.792854
Target:  5'- aCgUCUACuu-GCGGCGCCGgcggCGCCu- -3'
miRNA:   3'- -GgGGAUGuuuUGCCGUGGCa---GCGGug -5'
6742 3' -54.6 NC_001875.2 + 4513 0.67 0.903232
Target:  5'- uCCgCUGCGGAaaGCGGCGCac-CGCCGg -3'
miRNA:   3'- -GGgGAUGUUU--UGCCGUGgcaGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 9110 0.66 0.932029
Target:  5'- aCCCCgccACGAAcuCGGaCGCCGUggacucgcgCGCCAg -3'
miRNA:   3'- -GGGGa--UGUUUu-GCC-GUGGCA---------GCGGUg -5'
6742 3' -54.6 NC_001875.2 + 11091 0.69 0.819705
Target:  5'- gCCCUGgAc-ACGGcCGCCGUcucggCGCCGCa -3'
miRNA:   3'- gGGGAUgUuuUGCC-GUGGCA-----GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 12938 0.68 0.844984
Target:  5'- uCUUCUGCAAaaacuuguGACGGUcUCGUCGCgGCg -3'
miRNA:   3'- -GGGGAUGUU--------UUGCCGuGGCAGCGgUG- -5'
6742 3' -54.6 NC_001875.2 + 13024 0.68 0.844984
Target:  5'- -gUCUACAG--UGGCGCgGUCGCaCACg -3'
miRNA:   3'- ggGGAUGUUuuGCCGUGgCAGCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 14484 0.66 0.937054
Target:  5'- uCCCCgacgGCcAGcCGGCccGCCGguucgcccgCGCCGCg -3'
miRNA:   3'- -GGGGa---UGuUUuGCCG--UGGCa--------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 16384 0.67 0.896747
Target:  5'- gCCCgCUAgcuCAAcGCGGUAggugcgguguUCGUCGCCGCc -3'
miRNA:   3'- -GGG-GAU---GUUuUGCCGU----------GGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 16877 0.7 0.771351
Target:  5'- gCCCCUgguuguaugcguacGCGcAGCGGCGCCGcgaUGUCGCu -3'
miRNA:   3'- -GGGGA--------------UGUuUUGCCGUGGCa--GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 17327 0.68 0.868483
Target:  5'- --gCUGCu-GGCGGUugCGcCGCCGCg -3'
miRNA:   3'- gggGAUGuuUUGCCGugGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 18203 0.8 0.284218
Target:  5'- -aCUUugAuuacGCGGCGCCGUCGCCGCu -3'
miRNA:   3'- ggGGAugUuu--UGCCGUGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 19130 0.74 0.520898
Target:  5'- gCgCCUACcacGGCGGCGCCGUCaGCgACa -3'
miRNA:   3'- -GgGGAUGuu-UUGCCGUGGCAG-CGgUG- -5'
6742 3' -54.6 NC_001875.2 + 19763 0.67 0.890025
Target:  5'- -gCUUACAAGAgGGC-CCGgcaGCCGCc -3'
miRNA:   3'- ggGGAUGUUUUgCCGuGGCag-CGGUG- -5'
6742 3' -54.6 NC_001875.2 + 19936 0.67 0.892742
Target:  5'- gCCCgUACAcgGAGCGGCcggcgcgacgguccgGCCGgCGCCuCg -3'
miRNA:   3'- -GGGgAUGU--UUUGCCG---------------UGGCaGCGGuG- -5'
6742 3' -54.6 NC_001875.2 + 20024 0.71 0.695121
Target:  5'- gCCgUcacGCGGAGCagccaGGCGCCGUCGgCCGCg -3'
miRNA:   3'- gGGgA---UGUUUUG-----CCGUGGCAGC-GGUG- -5'
6742 3' -54.6 NC_001875.2 + 20633 0.66 0.937054
Target:  5'- gCCCgugaGCAacaaaAAACGGCGCgCGcCGCCcaGCg -3'
miRNA:   3'- gGGGa---UGU-----UUUGCCGUG-GCaGCGG--UG- -5'
6742 3' -54.6 NC_001875.2 + 20749 0.67 0.915482
Target:  5'- gCCgCaACAAAagguuuucACGGCGCCGgcgUCGuCCACg -3'
miRNA:   3'- -GGgGaUGUUU--------UGCCGUGGC---AGC-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.