Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6742 | 3' | -54.6 | NC_001875.2 | + | 129179 | 0.66 | 0.941836 |
Target: 5'- gCCCCa-------GGCGCCGccggCGCCGCa -3' miRNA: 3'- -GGGGauguuuugCCGUGGCa---GCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 61192 | 0.66 | 0.932029 |
Target: 5'- uUCCgcauugcacGCAAAcGCGGCGCCGUCG-UACa -3' miRNA: 3'- gGGGa--------UGUUU-UGCCGUGGCAGCgGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 86904 | 0.66 | 0.932029 |
Target: 5'- gCgCCgGCGAAAacgaGGCGCUGaagCGCCGCc -3' miRNA: 3'- -GgGGaUGUUUUg---CCGUGGCa--GCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 96004 | 0.66 | 0.941836 |
Target: 5'- aCCCUGCAAAA-GGCcACCaGaCGCC-Ca -3' miRNA: 3'- gGGGAUGUUUUgCCG-UGG-CaGCGGuG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 130846 | 0.66 | 0.926758 |
Target: 5'- gCCaUACAGGAuuagaaacguUGGCGagCGUCGCCGCg -3' miRNA: 3'- gGGgAUGUUUU----------GCCGUg-GCAGCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 43013 | 0.66 | 0.937054 |
Target: 5'- -gCCUcCAuuGCGaGUGCCGcgCGCCGCg -3' miRNA: 3'- ggGGAuGUuuUGC-CGUGGCa-GCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 42352 | 0.66 | 0.921243 |
Target: 5'- uCCCaaGCGGuuGCGGCGCgaGggCGCCACu -3' miRNA: 3'- -GGGgaUGUUu-UGCCGUGg-Ca-GCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 56820 | 0.66 | 0.926758 |
Target: 5'- aCUCguucACGGccGACGGCugCGU-GCCGCa -3' miRNA: 3'- gGGGa---UGUU--UUGCCGugGCAgCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 109014 | 0.66 | 0.926758 |
Target: 5'- gUCgUGCcgccGACGGUGCCGUCGgaCCGCa -3' miRNA: 3'- gGGgAUGuu--UUGCCGUGGCAGC--GGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 39034 | 0.66 | 0.937054 |
Target: 5'- aCCUCgGCAucggcGGCGGCGCUGUa-CCGCa -3' miRNA: 3'- -GGGGaUGUu----UUGCCGUGGCAgcGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 123717 | 0.66 | 0.932029 |
Target: 5'- -aCCUACAAGuACaGCAgCGUgGCCAa -3' miRNA: 3'- ggGGAUGUUU-UGcCGUgGCAgCGGUg -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 90612 | 0.66 | 0.932029 |
Target: 5'- uUCCUUGaugaGGGAcCGGUugCG-CGCCACa -3' miRNA: 3'- -GGGGAUg---UUUU-GCCGugGCaGCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 9110 | 0.66 | 0.932029 |
Target: 5'- aCCCCgccACGAAcuCGGaCGCCGUggacucgcgCGCCAg -3' miRNA: 3'- -GGGGa--UGUUUu-GCC-GUGGCA---------GCGGUg -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 69223 | 0.66 | 0.91954 |
Target: 5'- aCCUUGCAuucggacACGGCGgCGUCgaacggcgcgcuggGCCGCg -3' miRNA: 3'- gGGGAUGUuu-----UGCCGUgGCAG--------------CGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 77376 | 0.66 | 0.928896 |
Target: 5'- gUCCUGCcgcacacgcuguGCGGCGCCGcggcuaacgacCGCCACg -3' miRNA: 3'- gGGGAUGuuu---------UGCCGUGGCa----------GCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 38497 | 0.66 | 0.921243 |
Target: 5'- cUCCCgacgACAAggUGGUGCUGgUGUCGCa -3' miRNA: 3'- -GGGGa---UGUUuuGCCGUGGCaGCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 32960 | 0.66 | 0.939953 |
Target: 5'- uUCCC---GAAACGGCGCCcgcgcacauuagCGCCACc -3' miRNA: 3'- -GGGGaugUUUUGCCGUGGca----------GCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 71538 | 0.66 | 0.926758 |
Target: 5'- aCCgCUGCGAcGCGucgccuGCAgUGUCGCCAa -3' miRNA: 3'- -GGgGAUGUUuUGC------CGUgGCAGCGGUg -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 98286 | 0.66 | 0.932029 |
Target: 5'- gCCCCgcgGCG--ACcGCACUGUgGCCAa -3' miRNA: 3'- -GGGGa--UGUuuUGcCGUGGCAgCGGUg -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 20633 | 0.66 | 0.937054 |
Target: 5'- gCCCgugaGCAacaaaAAACGGCGCgCGcCGCCcaGCg -3' miRNA: 3'- gGGGa---UGU-----UUUGCCGUG-GCaGCGG--UG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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