miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 3' -54.6 NC_001875.2 + 38497 0.66 0.921243
Target:  5'- cUCCCgacgACAAggUGGUGCUGgUGUCGCa -3'
miRNA:   3'- -GGGGa---UGUUuuGCCGUGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 130846 0.66 0.926758
Target:  5'- gCCaUACAGGAuuagaaacguUGGCGagCGUCGCCGCg -3'
miRNA:   3'- gGGgAUGUUUU----------GCCGUg-GCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 86904 0.66 0.932029
Target:  5'- gCgCCgGCGAAAacgaGGCGCUGaagCGCCGCc -3'
miRNA:   3'- -GgGGaUGUUUUg---CCGUGGCa--GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 58245 0.66 0.934068
Target:  5'- cCCCCaucgccGCAGAaaAUGGCGCUcgugucacccgggguGUCGUCGCg -3'
miRNA:   3'- -GGGGa-----UGUUU--UGCCGUGG---------------CAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 83004 0.66 0.937054
Target:  5'- -nCCggcggGCuuGAAGCGGCGCCGUaGCgCGCg -3'
miRNA:   3'- ggGGa----UG--UUUUGCCGUGGCAgCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 51190 0.66 0.941836
Target:  5'- gCCC-ACG--ACGGCGCgGUucuggCGCCGCc -3'
miRNA:   3'- gGGGaUGUuuUGCCGUGgCA-----GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 42352 0.66 0.921243
Target:  5'- uCCCaaGCGGuuGCGGCGCgaGggCGCCACu -3'
miRNA:   3'- -GGGgaUGUUu-UGCCGUGg-Ca-GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 20633 0.66 0.937054
Target:  5'- gCCCgugaGCAacaaaAAACGGCGCgCGcCGCCcaGCg -3'
miRNA:   3'- gGGGa---UGU-----UUUGCCGUG-GCaGCGG--UG- -5'
6742 3' -54.6 NC_001875.2 + 32960 0.66 0.939953
Target:  5'- uUCCC---GAAACGGCGCCcgcgcacauuagCGCCACc -3'
miRNA:   3'- -GGGGaugUUUUGCCGUGGca----------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 123717 0.66 0.932029
Target:  5'- -aCCUACAAGuACaGCAgCGUgGCCAa -3'
miRNA:   3'- ggGGAUGUUU-UGcCGUgGCAgCGGUg -5'
6742 3' -54.6 NC_001875.2 + 43013 0.66 0.937054
Target:  5'- -gCCUcCAuuGCGaGUGCCGcgCGCCGCg -3'
miRNA:   3'- ggGGAuGUuuUGC-CGUGGCa-GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 39034 0.66 0.937054
Target:  5'- aCCUCgGCAucggcGGCGGCGCUGUa-CCGCa -3'
miRNA:   3'- -GGGGaUGUu----UUGCCGUGGCAgcGGUG- -5'
6742 3' -54.6 NC_001875.2 + 103024 0.67 0.915482
Target:  5'- aCCCU----GACGGuCACCGgcUCGCuCACg -3'
miRNA:   3'- gGGGAuguuUUGCC-GUGGC--AGCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 113339 0.67 0.903232
Target:  5'- uUCgUGCGGcgggucgggcGCGGCugCGUCGCUGCg -3'
miRNA:   3'- gGGgAUGUUu---------UGCCGugGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 124765 0.67 0.909478
Target:  5'- -gUCUGCGcacAGGcCGGUGgCGUCGCCGCa -3'
miRNA:   3'- ggGGAUGU---UUU-GCCGUgGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 62067 0.67 0.903232
Target:  5'- aCUCa--AAAAC-GCGCCGUCGCCAa -3'
miRNA:   3'- gGGGaugUUUUGcCGUGGCAGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 88986 0.67 0.903232
Target:  5'- -aCCUGCGccuGCGGCgcGCCGgauuugcgCGCUACg -3'
miRNA:   3'- ggGGAUGUuu-UGCCG--UGGCa-------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 69480 0.67 0.909478
Target:  5'- cUCCCUGgcgcgcgaccCAAAcUGGCGCCG-CGcCCACu -3'
miRNA:   3'- -GGGGAU----------GUUUuGCCGUGGCaGC-GGUG- -5'
6742 3' -54.6 NC_001875.2 + 101620 0.67 0.883071
Target:  5'- aCCaCgUACAAAGUGGUcgccacaacgGCCGUCGCgGCg -3'
miRNA:   3'- -GG-GgAUGUUUUGCCG----------UGGCAGCGgUG- -5'
6742 3' -54.6 NC_001875.2 + 100247 0.67 0.909478
Target:  5'- gCCC-ACGGcACGGCGCCGgacaCCACc -3'
miRNA:   3'- gGGGaUGUUuUGCCGUGGCagc-GGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.