miRNA display CGI


Results 21 - 40 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 3' -54.6 NC_001875.2 + 66108 0.71 0.682844
Target:  5'- gCCCgcgcggcgggcgGCGAGGCGGCGCCG-C-CCGCg -3'
miRNA:   3'- gGGGa-----------UGUUUUGCCGUGGCaGcGGUG- -5'
6742 3' -54.6 NC_001875.2 + 20024 0.71 0.695121
Target:  5'- gCCgUcacGCGGAGCagccaGGCGCCGUCGgCCGCg -3'
miRNA:   3'- gGGgA---UGUUUUG-----CCGUGGCAGC-GGUG- -5'
6742 3' -54.6 NC_001875.2 + 81004 0.71 0.695121
Target:  5'- gCCCCaauCGccgguuguguauAAugGGCACCGUCGauuCCACa -3'
miRNA:   3'- -GGGGau-GU------------UUugCCGUGGCAGC---GGUG- -5'
6742 3' -54.6 NC_001875.2 + 65719 0.71 0.695121
Target:  5'- uUCCgc--GGGCGGCGCCGccUCGCCGCc -3'
miRNA:   3'- gGGGauguUUUGCCGUGGC--AGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 105545 0.71 0.695121
Target:  5'- aCCUUGCAGucguCGGUGUCGUCGUCGCa -3'
miRNA:   3'- gGGGAUGUUuu--GCCGUGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 33920 0.71 0.695121
Target:  5'- aCCCCUcgucgaaacgcaGCGGGcguCGGCGCCGaCGcCCGCa -3'
miRNA:   3'- -GGGGA------------UGUUUu--GCCGUGGCaGC-GGUG- -5'
6742 3' -54.6 NC_001875.2 + 83318 0.71 0.705294
Target:  5'- aCCC-GCGGGGCGcGCGCCGggcggcgCGCCAa -3'
miRNA:   3'- gGGGaUGUUUUGC-CGUGGCa------GCGGUg -5'
6742 3' -54.6 NC_001875.2 + 113553 0.71 0.705294
Target:  5'- aUCCCaauCA--ACGGCGCgGUCGCgCACg -3'
miRNA:   3'- -GGGGau-GUuuUGCCGUGgCAGCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 125148 0.71 0.705294
Target:  5'- -gUgUACAAAugGCGuGCGCCGUCGUCGCc -3'
miRNA:   3'- ggGgAUGUUU--UGC-CGUGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 127966 0.71 0.734403
Target:  5'- gCCCaGCuuGGCGGCGCgGUgcugccgUGCCACa -3'
miRNA:   3'- gGGGaUGuuUUGCCGUGgCA-------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 55234 0.71 0.739351
Target:  5'- aCCCUGCAugucaAGuagcacauauggaauGCGGuCGCCGUUGCCGg -3'
miRNA:   3'- gGGGAUGU-----UU---------------UGCC-GUGGCAGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 37862 0.7 0.755018
Target:  5'- aCCacaaacaUUACAAAACGGCggGCCG-CGCCAg -3'
miRNA:   3'- -GGg------GAUGUUUUGCCG--UGGCaGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 70241 0.7 0.755018
Target:  5'- gCCCgaaGCGccgcCGGCgcccgaGCCGUCGCCGCu -3'
miRNA:   3'- gGGGa--UGUuuu-GCCG------UGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 99024 0.7 0.764667
Target:  5'- gCUC-GC-AAGCGGCGCCGuUCGCCGa -3'
miRNA:   3'- gGGGaUGuUUUGCCGUGGC-AGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 92632 0.7 0.764667
Target:  5'- aCCCgACGAcguggcgguuguAGCGGCgcACCGUaaaCGCCACg -3'
miRNA:   3'- gGGGaUGUU------------UUGCCG--UGGCA---GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 77267 0.7 0.764667
Target:  5'- gCCgCCggGCGAAGCGGcCGCCG-CGgCGCa -3'
miRNA:   3'- -GG-GGa-UGUUUUGCC-GUGGCaGCgGUG- -5'
6742 3' -54.6 NC_001875.2 + 16877 0.7 0.771351
Target:  5'- gCCCCUgguuguaugcguacGCGcAGCGGCGCCGcgaUGUCGCu -3'
miRNA:   3'- -GGGGA--------------UGUuUUGCCGUGGCa--GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 108018 0.7 0.783595
Target:  5'- aCCCgcCAGAgacACGGCGcgcCCGaCGCCGCg -3'
miRNA:   3'- gGGGauGUUU---UGCCGU---GGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 23071 0.69 0.792854
Target:  5'- gCCCUggACAAcacCGGCAacCCG-CGCCGCg -3'
miRNA:   3'- gGGGA--UGUUuu-GCCGU--GGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 40853 0.69 0.792854
Target:  5'- gCUCgcCAAGACGcGCACCGcgggCGCCAUc -3'
miRNA:   3'- gGGGauGUUUUGC-CGUGGCa---GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.