miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 3' -54.6 NC_001875.2 + 114037 1.1 0.002858
Target:  5'- gCCCCUACAAAACGGCACCGUCGCCACc -3'
miRNA:   3'- -GGGGAUGUUUUGCCGUGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 107555 0.81 0.228562
Target:  5'- gCCCUAUGGAcaagcGCGGCGCCGUCGCaCAa -3'
miRNA:   3'- gGGGAUGUUU-----UGCCGUGGCAGCG-GUg -5'
6742 3' -54.6 NC_001875.2 + 29403 0.81 0.245415
Target:  5'- aCCUUGCAAAACGcGCAgcgcaccUCGUCGCCGCg -3'
miRNA:   3'- gGGGAUGUUUUGC-CGU-------GGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 18203 0.8 0.284218
Target:  5'- -aCUUugAuuacGCGGCGCCGUCGCCGCu -3'
miRNA:   3'- ggGGAugUuu--UGCCGUGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 33024 0.77 0.374286
Target:  5'- cCCCCUuaagcGCAGcgcGGCgGGCGCCG-CGCCGCg -3'
miRNA:   3'- -GGGGA-----UGUU---UUG-CCGUGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 22817 0.77 0.382611
Target:  5'- gCCgUGCGGuccGACGGCACCGUCgGCgGCa -3'
miRNA:   3'- gGGgAUGUU---UUGCCGUGGCAG-CGgUG- -5'
6742 3' -54.6 NC_001875.2 + 33085 0.77 0.399628
Target:  5'- -aCUUugAugGCGGCGCCGUCGCgGCu -3'
miRNA:   3'- ggGGAugUuuUGCCGUGGCAGCGgUG- -5'
6742 3' -54.6 NC_001875.2 + 68114 0.77 0.408316
Target:  5'- aCgCCgGCGAAGCGccCGCCGUCGCCGCg -3'
miRNA:   3'- -GgGGaUGUUUUGCc-GUGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 95731 0.76 0.453464
Target:  5'- ---gUGCAuGAGCGGCGCCGcCGCCGCg -3'
miRNA:   3'- ggggAUGU-UUUGCCGUGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 83439 0.75 0.490493
Target:  5'- uCCCgUAaaucuccCGAGcCGGCACCuGUCGCCGCg -3'
miRNA:   3'- -GGGgAU-------GUUUuGCCGUGG-CAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 19130 0.74 0.520898
Target:  5'- gCgCCUACcacGGCGGCGCCGUCaGCgACa -3'
miRNA:   3'- -GgGGAUGuu-UUGCCGUGGCAG-CGgUG- -5'
6742 3' -54.6 NC_001875.2 + 76508 0.74 0.520898
Target:  5'- gCCCC--CGAAGCGGCgcgucaucACCGUCGCgCGCc -3'
miRNA:   3'- -GGGGauGUUUUGCCG--------UGGCAGCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 69083 0.74 0.561154
Target:  5'- aCCCCUGCGcguucAACGGCGCgG--GCCACa -3'
miRNA:   3'- -GGGGAUGUu----UUGCCGUGgCagCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 63942 0.74 0.561154
Target:  5'- uUCCUGCcGAGgaaGGCGCUGUCGCCGa -3'
miRNA:   3'- gGGGAUGuUUUg--CCGUGGCAGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 80291 0.73 0.612553
Target:  5'- gCUCgcACuuGACGaGCGCCGUCGCCAg -3'
miRNA:   3'- gGGGa-UGuuUUGC-CGUGGCAGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 40597 0.73 0.622907
Target:  5'- aCUCgUACu--ACGGCGCCGUggugggCGCCACc -3'
miRNA:   3'- -GGGgAUGuuuUGCCGUGGCA------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 82458 0.73 0.622907
Target:  5'- uUCgCggcgGCAgGAACGGUACCGcCGCCGCa -3'
miRNA:   3'- -GGgGa---UGU-UUUGCCGUGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 94326 0.73 0.622907
Target:  5'- gUCCagGCAGGGCGcgucguccGCACCGUCGCCGg -3'
miRNA:   3'- gGGGa-UGUUUUGC--------CGUGGCAGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 119456 0.72 0.653982
Target:  5'- gCCCgACGacGAGCGGCACCGUgGCa-- -3'
miRNA:   3'- gGGGaUGU--UUUGCCGUGGCAgCGgug -5'
6742 3' -54.6 NC_001875.2 + 104018 0.72 0.653982
Target:  5'- aCCCCUACGAGACcGCcaacgGCCaaUGCCGCa -3'
miRNA:   3'- -GGGGAUGUUUUGcCG-----UGGcaGCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.