miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 3' -54.6 NC_001875.2 + 23199 0.69 0.810918
Target:  5'- gCCCaACAAGGuaaucaGGCACCGcaagUUGCCACu -3'
miRNA:   3'- gGGGaUGUUUUg-----CCGUGGC----AGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 81004 0.71 0.695121
Target:  5'- gCCCCaauCGccgguuguguauAAugGGCACCGUCGauuCCACa -3'
miRNA:   3'- -GGGGau-GU------------UUugCCGUGGCAGC---GGUG- -5'
6742 3' -54.6 NC_001875.2 + 113553 0.71 0.705294
Target:  5'- aUCCCaauCA--ACGGCGCgGUCGCgCACg -3'
miRNA:   3'- -GGGGau-GUuuUGCCGUGgCAGCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 127966 0.71 0.734403
Target:  5'- gCCCaGCuuGGCGGCGCgGUgcugccgUGCCACa -3'
miRNA:   3'- gGGGaUGuuUUGCCGUGgCA-------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 55234 0.71 0.739351
Target:  5'- aCCCUGCAugucaAGuagcacauauggaauGCGGuCGCCGUUGCCGg -3'
miRNA:   3'- gGGGAUGU-----UU---------------UGCC-GUGGCAGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 37862 0.7 0.755018
Target:  5'- aCCacaaacaUUACAAAACGGCggGCCG-CGCCAg -3'
miRNA:   3'- -GGg------GAUGUUUUGCCG--UGGCaGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 70241 0.7 0.755018
Target:  5'- gCCCgaaGCGccgcCGGCgcccgaGCCGUCGCCGCu -3'
miRNA:   3'- gGGGa--UGUuuu-GCCG------UGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 40853 0.69 0.792854
Target:  5'- gCUCgcCAAGACGcGCACCGcgggCGCCAUc -3'
miRNA:   3'- gGGGauGUUUUGC-CGUGGCa---GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 23071 0.69 0.792854
Target:  5'- gCCCUggACAAcacCGGCAacCCG-CGCCGCg -3'
miRNA:   3'- gGGGA--UGUUuu-GCCGU--GGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 65719 0.71 0.695121
Target:  5'- uUCCgc--GGGCGGCGCCGccUCGCCGCc -3'
miRNA:   3'- gGGGauguUUUGCCGUGGC--AGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 105545 0.71 0.695121
Target:  5'- aCCUUGCAGucguCGGUGUCGUCGUCGCa -3'
miRNA:   3'- gGGGAUGUUuu--GCCGUGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 104018 0.72 0.653982
Target:  5'- aCCCCUACGAGACcGCcaacgGCCaaUGCCGCa -3'
miRNA:   3'- -GGGGAUGUUUUGcCG-----UGGcaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 29403 0.81 0.245415
Target:  5'- aCCUUGCAAAACGcGCAgcgcaccUCGUCGCCGCg -3'
miRNA:   3'- gGGGAUGUUUUGC-CGU-------GGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 22817 0.77 0.382611
Target:  5'- gCCgUGCGGuccGACGGCACCGUCgGCgGCa -3'
miRNA:   3'- gGGgAUGUU---UUGCCGUGGCAG-CGgUG- -5'
6742 3' -54.6 NC_001875.2 + 95731 0.76 0.453464
Target:  5'- ---gUGCAuGAGCGGCGCCGcCGCCGCg -3'
miRNA:   3'- ggggAUGU-UUUGCCGUGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 19130 0.74 0.520898
Target:  5'- gCgCCUACcacGGCGGCGCCGUCaGCgACa -3'
miRNA:   3'- -GgGGAUGuu-UUGCCGUGGCAG-CGgUG- -5'
6742 3' -54.6 NC_001875.2 + 69083 0.74 0.561154
Target:  5'- aCCCCUGCGcguucAACGGCGCgG--GCCACa -3'
miRNA:   3'- -GGGGAUGUu----UUGCCGUGgCagCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 80291 0.73 0.612553
Target:  5'- gCUCgcACuuGACGaGCGCCGUCGCCAg -3'
miRNA:   3'- gGGGa-UGuuUUGC-CGUGGCAGCGGUg -5'
6742 3' -54.6 NC_001875.2 + 82458 0.73 0.622907
Target:  5'- uUCgCggcgGCAgGAACGGUACCGcCGCCGCa -3'
miRNA:   3'- -GGgGa---UGU-UUUGCCGUGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 40597 0.73 0.622907
Target:  5'- aCUCgUACu--ACGGCGCCGUggugggCGCCACc -3'
miRNA:   3'- -GGGgAUGuuuUGCCGUGGCA------GCGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.