Results 1 - 20 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6742 | 3' | -54.6 | NC_001875.2 | + | 114037 | 1.1 | 0.002858 |
Target: 5'- gCCCCUACAAAACGGCACCGUCGCCACc -3' miRNA: 3'- -GGGGAUGUUUUGCCGUGGCAGCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 92632 | 0.7 | 0.764667 |
Target: 5'- aCCCgACGAcguggcgguuguAGCGGCgcACCGUaaaCGCCACg -3' miRNA: 3'- gGGGaUGUU------------UUGCCG--UGGCA---GCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 108018 | 0.7 | 0.783595 |
Target: 5'- aCCCgcCAGAgacACGGCGcgcCCGaCGCCGCg -3' miRNA: 3'- gGGGauGUUU---UGCCGU---GGCaGCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 51190 | 0.66 | 0.941836 |
Target: 5'- gCCC-ACG--ACGGCGCgGUucuggCGCCGCc -3' miRNA: 3'- gGGGaUGUuuUGCCGUGgCA-----GCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 68114 | 0.77 | 0.408316 |
Target: 5'- aCgCCgGCGAAGCGccCGCCGUCGCCGCg -3' miRNA: 3'- -GgGGaUGUUUUGCc-GUGGCAGCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 83439 | 0.75 | 0.490493 |
Target: 5'- uCCCgUAaaucuccCGAGcCGGCACCuGUCGCCGCg -3' miRNA: 3'- -GGGgAU-------GUUUuGCCGUGG-CAGCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 63942 | 0.74 | 0.561154 |
Target: 5'- uUCCUGCcGAGgaaGGCGCUGUCGCCGa -3' miRNA: 3'- gGGGAUGuUUUg--CCGUGGCAGCGGUg -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 94326 | 0.73 | 0.622907 |
Target: 5'- gUCCagGCAGGGCGcgucguccGCACCGUCGCCGg -3' miRNA: 3'- gGGGa-UGUUUUGC--------CGUGGCAGCGGUg -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 20024 | 0.71 | 0.695121 |
Target: 5'- gCCgUcacGCGGAGCagccaGGCGCCGUCGgCCGCg -3' miRNA: 3'- gGGgA---UGUUUUG-----CCGUGGCAGC-GGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 77267 | 0.7 | 0.764667 |
Target: 5'- gCCgCCggGCGAAGCGGcCGCCG-CGgCGCa -3' miRNA: 3'- -GG-GGa-UGUUUUGCC-GUGGCaGCgGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 125148 | 0.71 | 0.705294 |
Target: 5'- -gUgUACAAAugGCGuGCGCCGUCGUCGCc -3' miRNA: 3'- ggGgAUGUUU--UGC-CGUGGCAGCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 66108 | 0.71 | 0.682844 |
Target: 5'- gCCCgcgcggcgggcgGCGAGGCGGCGCCG-C-CCGCg -3' miRNA: 3'- gGGGa-----------UGUUUUGCCGUGGCaGcGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 18203 | 0.8 | 0.284218 |
Target: 5'- -aCUUugAuuacGCGGCGCCGUCGCCGCu -3' miRNA: 3'- ggGGAugUuu--UGCCGUGGCAGCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 83318 | 0.71 | 0.705294 |
Target: 5'- aCCC-GCGGGGCGcGCGCCGggcggcgCGCCAa -3' miRNA: 3'- gGGGaUGUUUUGC-CGUGGCa------GCGGUg -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 33024 | 0.77 | 0.374286 |
Target: 5'- cCCCCUuaagcGCAGcgcGGCgGGCGCCG-CGCCGCg -3' miRNA: 3'- -GGGGA-----UGUU---UUG-CCGUGGCaGCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 119456 | 0.72 | 0.653982 |
Target: 5'- gCCCgACGacGAGCGGCACCGUgGCa-- -3' miRNA: 3'- gGGGaUGU--UUUGCCGUGGCAgCGgug -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 99024 | 0.7 | 0.764667 |
Target: 5'- gCUC-GC-AAGCGGCGCCGuUCGCCGa -3' miRNA: 3'- gGGGaUGuUUUGCCGUGGC-AGCGGUg -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 16877 | 0.7 | 0.771351 |
Target: 5'- gCCCCUgguuguaugcguacGCGcAGCGGCGCCGcgaUGUCGCu -3' miRNA: 3'- -GGGGA--------------UGUuUUGCCGUGGCa--GCGGUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 33085 | 0.77 | 0.399628 |
Target: 5'- -aCUUugAugGCGGCGCCGUCGCgGCu -3' miRNA: 3'- ggGGAugUuuUGCCGUGGCAGCGgUG- -5' |
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6742 | 3' | -54.6 | NC_001875.2 | + | 76508 | 0.74 | 0.520898 |
Target: 5'- gCCCC--CGAAGCGGCgcgucaucACCGUCGCgCGCc -3' miRNA: 3'- -GGGGauGUUUUGCCG--------UGGCAGCG-GUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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