miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 3' -54.6 NC_001875.2 + 130846 0.66 0.926758
Target:  5'- gCCaUACAGGAuuagaaacguUGGCGagCGUCGCCGCg -3'
miRNA:   3'- gGGgAUGUUUU----------GCCGUg-GCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 129179 0.66 0.941836
Target:  5'- gCCCCa-------GGCGCCGccggCGCCGCa -3'
miRNA:   3'- -GGGGauguuuugCCGUGGCa---GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 127966 0.71 0.734403
Target:  5'- gCCCaGCuuGGCGGCGCgGUgcugccgUGCCACa -3'
miRNA:   3'- gGGGaUGuuUUGCCGUGgCA-------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 125148 0.71 0.705294
Target:  5'- -gUgUACAAAugGCGuGCGCCGUCGUCGCc -3'
miRNA:   3'- ggGgAUGUUU--UGC-CGUGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 125072 0.69 0.810918
Target:  5'- gCCCUgaaacacgccGCGAAugcGCGGCACauCGUUGCUGCg -3'
miRNA:   3'- gGGGA----------UGUUU---UGCCGUG--GCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 124765 0.67 0.909478
Target:  5'- -gUCUGCGcacAGGcCGGUGgCGUCGCCGCa -3'
miRNA:   3'- ggGGAUGU---UUU-GCCGUgGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 123717 0.66 0.932029
Target:  5'- -aCCUACAAGuACaGCAgCGUgGCCAa -3'
miRNA:   3'- ggGGAUGUUU-UGcCGUgGCAgCGGUg -5'
6742 3' -54.6 NC_001875.2 + 119884 0.67 0.896747
Target:  5'- gCUUCUGCAAcGCGcCGCCGgUCGCgCGCa -3'
miRNA:   3'- -GGGGAUGUUuUGCcGUGGC-AGCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 119456 0.72 0.653982
Target:  5'- gCCCgACGacGAGCGGCACCGUgGCa-- -3'
miRNA:   3'- gGGGaUGU--UUUGCCGUGGCAgCGgug -5'
6742 3' -54.6 NC_001875.2 + 118014 0.68 0.875158
Target:  5'- gCCCUcuuccgguaccGCGAccagugcGACGGCaacGCCG-CGCCACc -3'
miRNA:   3'- gGGGA-----------UGUU-------UUGCCG---UGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 115601 0.69 0.819705
Target:  5'- ----cGCGuGACGGCcUCGUCGCCGCa -3'
miRNA:   3'- ggggaUGUuUUGCCGuGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 114037 1.1 0.002858
Target:  5'- gCCCCUACAAAACGGCACCGUCGCCACc -3'
miRNA:   3'- -GGGGAUGUUUUGCCGUGGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 113553 0.71 0.705294
Target:  5'- aUCCCaauCA--ACGGCGCgGUCGCgCACg -3'
miRNA:   3'- -GGGGau-GUuuUGCCGUGgCAGCG-GUG- -5'
6742 3' -54.6 NC_001875.2 + 113380 0.67 0.915482
Target:  5'- gCCCgguCA--GCGGCGCgCGauucgcgCGCCACg -3'
miRNA:   3'- gGGGau-GUuuUGCCGUG-GCa------GCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 113339 0.67 0.903232
Target:  5'- uUCgUGCGGcgggucgggcGCGGCugCGUCGCUGCg -3'
miRNA:   3'- gGGgAUGUUu---------UGCCGugGCAGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 110742 0.67 0.896747
Target:  5'- gCgCgUGCAGuuuaagcGCGGCgACCGcCGCCGCg -3'
miRNA:   3'- -GgGgAUGUUu------UGCCG-UGGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 110297 0.67 0.896747
Target:  5'- gCCCCgucgcCGAGACGGUGCUGgacUGCgGCa -3'
miRNA:   3'- -GGGGau---GUUUUGCCGUGGCa--GCGgUG- -5'
6742 3' -54.6 NC_001875.2 + 109014 0.66 0.926758
Target:  5'- gUCgUGCcgccGACGGUGCCGUCGgaCCGCa -3'
miRNA:   3'- gGGgAUGuu--UUGCCGUGGCAGC--GGUG- -5'
6742 3' -54.6 NC_001875.2 + 108018 0.7 0.783595
Target:  5'- aCCCgcCAGAgacACGGCGcgcCCGaCGCCGCg -3'
miRNA:   3'- gGGGauGUUU---UGCCGU---GGCaGCGGUG- -5'
6742 3' -54.6 NC_001875.2 + 107555 0.81 0.228562
Target:  5'- gCCCUAUGGAcaagcGCGGCGCCGUCGCaCAa -3'
miRNA:   3'- gGGGAUGUUU-----UGCCGUGGCAGCG-GUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.