miRNA display CGI


Results 21 - 40 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 5' -55.9 NC_001875.2 + 48256 0.66 0.866975
Target:  5'- cUACgGCGGCGCCccGCCGggacaccucaugUGUCCGCc- -3'
miRNA:   3'- cAUGaCGUUGCGG--CGGC------------ACAGGUGuu -5'
6742 5' -55.9 NC_001875.2 + 49802 0.66 0.866975
Target:  5'- -cGCU-CAGC-CCGCCGcgaUGUCCACGu -3'
miRNA:   3'- caUGAcGUUGcGGCGGC---ACAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 54104 0.66 0.834616
Target:  5'- -aGCUGCuGCGCCGCCGaauUgCGCGu -3'
miRNA:   3'- caUGACGuUGCGGCGGCac-AgGUGUu -5'
6742 5' -55.9 NC_001875.2 + 58049 0.66 0.874525
Target:  5'- -cGCUGCcguuccaGCCGCCGccgCCACAAc -3'
miRNA:   3'- caUGACGuug----CGGCGGCacaGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 59583 0.71 0.596189
Target:  5'- -cGCUGCAGCGUgGCCGacGUgCGCGAg -3'
miRNA:   3'- caUGACGUUGCGgCGGCa-CAgGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 61480 0.66 0.874525
Target:  5'- uUGCUGCAGCGCgucgauuaucaCGUCGUuuUCCGCGu -3'
miRNA:   3'- cAUGACGUUGCG-----------GCGGCAc-AGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 61604 0.66 0.874525
Target:  5'- -gGCgccgGCGGCGCUucggGCUGUGUCgGCGg -3'
miRNA:   3'- caUGa---CGUUGCGG----CGGCACAGgUGUu -5'
6742 5' -55.9 NC_001875.2 + 62609 0.74 0.392156
Target:  5'- -cGCcGUucGACGCCGCCGUGUCCgaauGCAAg -3'
miRNA:   3'- caUGaCG--UUGCGGCGGCACAGG----UGUU- -5'
6742 5' -55.9 NC_001875.2 + 70342 0.67 0.799161
Target:  5'- -gACUGCGGCGCCgaGCCGg--CgCGCAAa -3'
miRNA:   3'- caUGACGUUGCGG--CGGCacaG-GUGUU- -5'
6742 5' -55.9 NC_001875.2 + 71540 0.66 0.859202
Target:  5'- -cGCUGCGACGCguCGCCugcaGUGUCgccaACAAg -3'
miRNA:   3'- caUGACGUUGCG--GCGG----CACAGg---UGUU- -5'
6742 5' -55.9 NC_001875.2 + 72515 0.68 0.75134
Target:  5'- -cACUGCAGCcUCaCCGUGUCCAUg- -3'
miRNA:   3'- caUGACGUUGcGGcGGCACAGGUGuu -5'
6742 5' -55.9 NC_001875.2 + 74105 0.66 0.842185
Target:  5'- -gGCaGCGACGCCGUgcuggcgCGUGUUCGCc- -3'
miRNA:   3'- caUGaCGUUGCGGCG-------GCACAGGUGuu -5'
6742 5' -55.9 NC_001875.2 + 75594 0.7 0.638152
Target:  5'- aGUACUGCAGcCGCgCGCCGgcGUgUACGAg -3'
miRNA:   3'- -CAUGACGUU-GCG-GCGGCa-CAgGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 78404 0.76 0.304859
Target:  5'- aGUGCUGCAcGCGCUgGCCGUGUgCGCGc -3'
miRNA:   3'- -CAUGACGU-UGCGG-CGGCACAgGUGUu -5'
6742 5' -55.9 NC_001875.2 + 78478 0.66 0.873781
Target:  5'- gGUuCUG-AACGCCGUCGUcguagucGUCCACGu -3'
miRNA:   3'- -CAuGACgUUGCGGCGGCA-------CAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 80083 0.66 0.851214
Target:  5'- --uUUGCAGCGCgC-CCGaaaUGUCCACGAg -3'
miRNA:   3'- cauGACGUUGCG-GcGGC---ACAGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 85224 0.66 0.859202
Target:  5'- -cGCgGUAGCGCCGCa-UGUCgACGAg -3'
miRNA:   3'- caUGaCGUUGCGGCGgcACAGgUGUU- -5'
6742 5' -55.9 NC_001875.2 + 86602 0.68 0.75134
Target:  5'- uGUACgacaagGCGacGCGCCGCC-UGUUCGCGc -3'
miRNA:   3'- -CAUGa-----CGU--UGCGGCGGcACAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 87312 0.69 0.69042
Target:  5'- -cGC-GCGACGCUGCUGUGaacgaagCCGCAAa -3'
miRNA:   3'- caUGaCGUUGCGGCGGCACa------GGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 89381 0.66 0.843015
Target:  5'- uUGCUGCGugGCuCGCCGcagcggCCGCu- -3'
miRNA:   3'- cAUGACGUugCG-GCGGCaca---GGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.