miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 5' -55.9 NC_001875.2 + 928 0.66 0.874525
Target:  5'- -gACUGCAGgGCCGC---GUCCAUGAu -3'
miRNA:   3'- caUGACGUUgCGGCGgcaCAGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 1717 0.68 0.765061
Target:  5'- aUGCUGCGggcgcgacaccggucGCGCCGCCGccgCCGCc- -3'
miRNA:   3'- cAUGACGU---------------UGCGGCGGCacaGGUGuu -5'
6742 5' -55.9 NC_001875.2 + 2289 0.66 0.834616
Target:  5'- cGUGaUGC-GCGCgCGCCGUGgCCGCGc -3'
miRNA:   3'- -CAUgACGuUGCG-GCGGCACaGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 5046 0.67 0.799161
Target:  5'- -gGCUGCAAaGCCGCCGcagcuUGcacagCCGCAGu -3'
miRNA:   3'- caUGACGUUgCGGCGGC-----ACa----GGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 5823 0.68 0.761164
Target:  5'- -gACUGcCAGCGCCGCCGaucUGgacgcgcCCGCGu -3'
miRNA:   3'- caUGAC-GUUGCGGCGGC---ACa------GGUGUu -5'
6742 5' -55.9 NC_001875.2 + 8524 0.66 0.859202
Target:  5'- -cACUGCAACGCguuaaGUuuCGUGUCCAa-- -3'
miRNA:   3'- caUGACGUUGCGg----CG--GCACAGGUguu -5'
6742 5' -55.9 NC_001875.2 + 8936 0.66 0.843015
Target:  5'- -cGCUGCAGCagcgGCCgGCCGUuucGUCCAaCAc -3'
miRNA:   3'- caUGACGUUG----CGG-CGGCA---CAGGU-GUu -5'
6742 5' -55.9 NC_001875.2 + 9632 0.69 0.680031
Target:  5'- -aGCUGCGuGCGCgCGCCGUGcguguUUCGCGAg -3'
miRNA:   3'- caUGACGU-UGCG-GCGGCAC-----AGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 9891 0.76 0.304859
Target:  5'- -cGCUGCAACGCUGCCGcGcgcaCCACAAa -3'
miRNA:   3'- caUGACGUUGCGGCGGCaCa---GGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 12293 0.67 0.799161
Target:  5'- uGUGCagccgGC-ACGCCGCCGUGUgCGu-- -3'
miRNA:   3'- -CAUGa----CGuUGCGGCGGCACAgGUguu -5'
6742 5' -55.9 NC_001875.2 + 13258 0.72 0.514032
Target:  5'- -cACgGCGGCGCCGCg--GUCCACAAu -3'
miRNA:   3'- caUGaCGUUGCGGCGgcaCAGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 17326 0.66 0.859202
Target:  5'- -aGCUGCuggcgguuGCGCCGCCGcgcGaCCGCGu -3'
miRNA:   3'- caUGACGu-------UGCGGCGGCa--CaGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 24278 0.74 0.400859
Target:  5'- cUugUGCGACGgCGCCGcgcuUGUCCAUAGg -3'
miRNA:   3'- cAugACGUUGCgGCGGC----ACAGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 29835 0.7 0.659137
Target:  5'- -cGCUGCAGuccacCGCCGCCGcGcacgCCGCAAu -3'
miRNA:   3'- caUGACGUU-----GCGGCGGCaCa---GGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 34423 0.67 0.808285
Target:  5'- cGUAC-GCGGuCGCCGCCGcGaCCAUAAu -3'
miRNA:   3'- -CAUGaCGUU-GCGGCGGCaCaGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 40600 0.69 0.721243
Target:  5'- cGUACUaCGGCGCCGUgGUGggcgCCACc- -3'
miRNA:   3'- -CAUGAcGUUGCGGCGgCACa---GGUGuu -5'
6742 5' -55.9 NC_001875.2 + 42487 0.68 0.761164
Target:  5'- -cGC-GCAcGCGCaCGCCGUcGUCCGCGu -3'
miRNA:   3'- caUGaCGU-UGCG-GCGGCA-CAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 44135 0.67 0.817242
Target:  5'- uUGCguccGCGgaGCGCUuuCCGUGUCCGCAAa -3'
miRNA:   3'- cAUGa---CGU--UGCGGc-GGCACAGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 44970 0.67 0.826022
Target:  5'- aGUGCUGCAGCaCCGUCGacGUCaGCAGc -3'
miRNA:   3'- -CAUGACGUUGcGGCGGCa-CAGgUGUU- -5'
6742 5' -55.9 NC_001875.2 + 45982 0.66 0.859202
Target:  5'- -cGCUGCGGCGaacuCGCCGUG--CACAAc -3'
miRNA:   3'- caUGACGUUGCg---GCGGCACagGUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.