Results 1 - 20 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
6742 | 5' | -55.9 | NC_001875.2 | + | 114075 | 1.06 | 0.003358 |
Target: 5'- uGUACUGCAACGCCGCCGUGUCCACAAg -3' miRNA: 3'- -CAUGACGUUGCGGCGGCACAGGUGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 120740 | 0.79 | 0.20052 |
Target: 5'- -aGCUGCGGCGCCgagacgggGCCGUGUCCAgGg -3' miRNA: 3'- caUGACGUUGCGG--------CGGCACAGGUgUu -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 78404 | 0.76 | 0.304859 |
Target: 5'- aGUGCUGCAcGCGCUgGCCGUGUgCGCGc -3' miRNA: 3'- -CAUGACGU-UGCGG-CGGCACAgGUGUu -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 9891 | 0.76 | 0.304859 |
Target: 5'- -cGCUGCAACGCUGCCGcGcgcaCCACAAa -3' miRNA: 3'- caUGACGUUGCGGCGGCaCa---GGUGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 108653 | 0.76 | 0.319558 |
Target: 5'- cUACUGCAAcCGCCaacgGCCGUGcCCGCAGc -3' miRNA: 3'- cAUGACGUU-GCGG----CGGCACaGGUGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 62609 | 0.74 | 0.392156 |
Target: 5'- -cGCcGUucGACGCCGCCGUGUCCgaauGCAAg -3' miRNA: 3'- caUGaCG--UUGCGGCGGCACAGG----UGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 24278 | 0.74 | 0.400859 |
Target: 5'- cUugUGCGACGgCGCCGcgcuUGUCCAUAGg -3' miRNA: 3'- cAugACGUUGCgGCGGC----ACAGGUGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 118590 | 0.74 | 0.409683 |
Target: 5'- -gACcGCGGCGCCGCCGUGUUUAa-- -3' miRNA: 3'- caUGaCGUUGCGGCGGCACAGGUguu -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 112709 | 0.72 | 0.504059 |
Target: 5'- -cGCUGaCGGCGCCGCCGUGguaggcgcgUCGCGc -3' miRNA: 3'- caUGAC-GUUGCGGCGGCACa--------GGUGUu -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 13258 | 0.72 | 0.514032 |
Target: 5'- -cACgGCGGCGCCGCg--GUCCACAAu -3' miRNA: 3'- caUGaCGUUGCGGCGgcaCAGGUGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 119887 | 0.72 | 0.544407 |
Target: 5'- --uCUGCAacGCGCCGCCG-GUCgCGCGc -3' miRNA: 3'- cauGACGU--UGCGGCGGCaCAG-GUGUu -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 118662 | 0.71 | 0.564979 |
Target: 5'- -cGCUGCGucagaACGCuCGCCGUGUUCGgCGAc -3' miRNA: 3'- caUGACGU-----UGCG-GCGGCACAGGU-GUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 59583 | 0.71 | 0.596189 |
Target: 5'- -cGCUGCAGCGUgGCCGacGUgCGCGAg -3' miRNA: 3'- caUGACGUUGCGgCGGCa-CAgGUGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 127975 | 0.7 | 0.627648 |
Target: 5'- -gGCggcGCggUGCUGCCGUG-CCACAc -3' miRNA: 3'- caUGa--CGuuGCGGCGGCACaGGUGUu -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 75594 | 0.7 | 0.638152 |
Target: 5'- aGUACUGCAGcCGCgCGCCGgcGUgUACGAg -3' miRNA: 3'- -CAUGACGUU-GCG-GCGGCa-CAgGUGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 99320 | 0.7 | 0.638152 |
Target: 5'- -gGCUGCGcagcaacguuGCGCgaagCGUCGUGUCCGCGc -3' miRNA: 3'- caUGACGU----------UGCG----GCGGCACAGGUGUu -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 29835 | 0.7 | 0.659137 |
Target: 5'- -cGCUGCAGuccacCGCCGCCGcGcacgCCGCAAu -3' miRNA: 3'- caUGACGUU-----GCGGCGGCaCa---GGUGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 94470 | 0.69 | 0.6696 |
Target: 5'- -aACUGCAGCGgCGCgCGcGUUCGCAc -3' miRNA: 3'- caUGACGUUGCgGCG-GCaCAGGUGUu -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 9632 | 0.69 | 0.680031 |
Target: 5'- -aGCUGCGuGCGCgCGCCGUGcguguUUCGCGAg -3' miRNA: 3'- caUGACGU-UGCG-GCGGCAC-----AGGUGUU- -5' |
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6742 | 5' | -55.9 | NC_001875.2 | + | 87312 | 0.69 | 0.69042 |
Target: 5'- -cGC-GCGACGCUGCUGUGaacgaagCCGCAAa -3' miRNA: 3'- caUGaCGUUGCGGCGGCACa------GGUGUU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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