miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 5' -55.9 NC_001875.2 + 44970 0.67 0.826022
Target:  5'- aGUGCUGCAGCaCCGUCGacGUCaGCAGc -3'
miRNA:   3'- -CAUGACGUUGcGGCGGCa-CAGgUGUU- -5'
6742 5' -55.9 NC_001875.2 + 129169 0.68 0.770869
Target:  5'- -cGCcGCAguugccccagGCGCCGCCGgcgCCGCAAg -3'
miRNA:   3'- caUGaCGU----------UGCGGCGGCacaGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 95730 0.67 0.789876
Target:  5'- aGUGCaugaGCGGCGCCGCCGccgcgugcUG-CCGCGc -3'
miRNA:   3'- -CAUGa---CGUUGCGGCGGC--------ACaGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 102770 0.67 0.789876
Target:  5'- -cGCUGCAGCGCUucaaaacuGCCGgaaugGUCUugAGc -3'
miRNA:   3'- caUGACGUUGCGG--------CGGCa----CAGGugUU- -5'
6742 5' -55.9 NC_001875.2 + 103172 0.67 0.789876
Target:  5'- cGUACgccaugucGCccACGCCGCCGU-UCCACAc -3'
miRNA:   3'- -CAUGa-------CGu-UGCGGCGGCAcAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 12293 0.67 0.799161
Target:  5'- uGUGCagccgGC-ACGCCGCCGUGUgCGu-- -3'
miRNA:   3'- -CAUGa----CGuUGCGGCGGCACAgGUguu -5'
6742 5' -55.9 NC_001875.2 + 117931 0.67 0.808285
Target:  5'- -aGCUGCAggccggcgugcGCGCCGCCGcguuugguuugGUCgACGAc -3'
miRNA:   3'- caUGACGU-----------UGCGGCGGCa----------CAGgUGUU- -5'
6742 5' -55.9 NC_001875.2 + 118036 0.67 0.817242
Target:  5'- aGUGCgacgGCAACGCCGCgccacccgcaCGauUGUCCgACAAc -3'
miRNA:   3'- -CAUGa---CGUUGCGGCG----------GC--ACAGG-UGUU- -5'
6742 5' -55.9 NC_001875.2 + 116577 0.67 0.817242
Target:  5'- ----aGCAccACGCCGCCGgugGUgCGCAGc -3'
miRNA:   3'- caugaCGU--UGCGGCGGCa--CAgGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 1717 0.68 0.765061
Target:  5'- aUGCUGCGggcgcgacaccggucGCGCCGCCGccgCCGCc- -3'
miRNA:   3'- cAUGACGU---------------UGCGGCGGCacaGGUGuu -5'
6742 5' -55.9 NC_001875.2 + 42487 0.68 0.761164
Target:  5'- -cGC-GCAcGCGCaCGCCGUcGUCCGCGu -3'
miRNA:   3'- caUGaCGU-UGCG-GCGGCA-CAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 5823 0.68 0.761164
Target:  5'- -gACUGcCAGCGCCGCCGaucUGgacgcgcCCGCGu -3'
miRNA:   3'- caUGAC-GUUGCGGCGGC---ACa------GGUGUu -5'
6742 5' -55.9 NC_001875.2 + 62609 0.74 0.392156
Target:  5'- -cGCcGUucGACGCCGCCGUGUCCgaauGCAAg -3'
miRNA:   3'- caUGaCG--UUGCGGCGGCACAGG----UGUU- -5'
6742 5' -55.9 NC_001875.2 + 13258 0.72 0.514032
Target:  5'- -cACgGCGGCGCCGCg--GUCCACAAu -3'
miRNA:   3'- caUGaCGUUGCGGCGgcaCAGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 127975 0.7 0.627648
Target:  5'- -gGCggcGCggUGCUGCCGUG-CCACAc -3'
miRNA:   3'- caUGa--CGuuGCGGCGGCACaGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 99320 0.7 0.638152
Target:  5'- -gGCUGCGcagcaacguuGCGCgaagCGUCGUGUCCGCGc -3'
miRNA:   3'- caUGACGU----------UGCG----GCGGCACAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 29835 0.7 0.659137
Target:  5'- -cGCUGCAGuccacCGCCGCCGcGcacgCCGCAAu -3'
miRNA:   3'- caUGACGUU-----GCGGCGGCaCa---GGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 87312 0.69 0.69042
Target:  5'- -cGC-GCGACGCUGCUGUGaacgaagCCGCAAa -3'
miRNA:   3'- caUGaCGUUGCGGCGGCACa------GGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 40600 0.69 0.721243
Target:  5'- cGUACUaCGGCGCCGUgGUGggcgCCACc- -3'
miRNA:   3'- -CAUGAcGUUGCGGCGgCACa---GGUGuu -5'
6742 5' -55.9 NC_001875.2 + 72515 0.68 0.75134
Target:  5'- -cACUGCAGCcUCaCCGUGUCCAUg- -3'
miRNA:   3'- caUGACGUUGcGGcGGCACAGGUGuu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.