miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
6742 5' -55.9 NC_001875.2 + 114075 1.06 0.003358
Target:  5'- uGUACUGCAACGCCGCCGUGUCCACAAg -3'
miRNA:   3'- -CAUGACGUUGCGGCGGCACAGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 94236 0.67 0.789876
Target:  5'- -gGCgaGC-ACGCCGCCGUGcggccggCCGCGg -3'
miRNA:   3'- caUGa-CGuUGCGGCGGCACa------GGUGUu -5'
6742 5' -55.9 NC_001875.2 + 70342 0.67 0.799161
Target:  5'- -gACUGCGGCGCCgaGCCGg--CgCGCAAa -3'
miRNA:   3'- caUGACGUUGCGG--CGGCacaG-GUGUU- -5'
6742 5' -55.9 NC_001875.2 + 61480 0.66 0.874525
Target:  5'- uUGCUGCAGCGCgucgauuaucaCGUCGUuuUCCGCGu -3'
miRNA:   3'- cAUGACGUUGCG-----------GCGGCAc-AGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 24278 0.74 0.400859
Target:  5'- cUugUGCGACGgCGCCGcgcuUGUCCAUAGg -3'
miRNA:   3'- cAugACGUUGCgGCGGC----ACAGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 118590 0.74 0.409683
Target:  5'- -gACcGCGGCGCCGCCGUGUUUAa-- -3'
miRNA:   3'- caUGaCGUUGCGGCGGCACAGGUguu -5'
6742 5' -55.9 NC_001875.2 + 119887 0.72 0.544407
Target:  5'- --uCUGCAacGCGCCGCCG-GUCgCGCGc -3'
miRNA:   3'- cauGACGU--UGCGGCGGCaCAG-GUGUu -5'
6742 5' -55.9 NC_001875.2 + 118662 0.71 0.564979
Target:  5'- -cGCUGCGucagaACGCuCGCCGUGUUCGgCGAc -3'
miRNA:   3'- caUGACGU-----UGCG-GCGGCACAGGU-GUU- -5'
6742 5' -55.9 NC_001875.2 + 94470 0.69 0.6696
Target:  5'- -aACUGCAGCGgCGCgCGcGUUCGCAc -3'
miRNA:   3'- caUGACGUUGCgGCG-GCaCAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 128008 0.68 0.761164
Target:  5'- -gGCUGCGgccGCGCCGgCGUGcgCCgACGAc -3'
miRNA:   3'- caUGACGU---UGCGGCgGCACa-GG-UGUU- -5'
6742 5' -55.9 NC_001875.2 + 99841 0.69 0.721243
Target:  5'- -cGCUGCGuCGCCGCCGc--UCACAAa -3'
miRNA:   3'- caUGACGUuGCGGCGGCacaGGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 75594 0.7 0.638152
Target:  5'- aGUACUGCAGcCGCgCGCCGgcGUgUACGAg -3'
miRNA:   3'- -CAUGACGUU-GCG-GCGGCa-CAgGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 120740 0.79 0.20052
Target:  5'- -aGCUGCGGCGCCgagacgggGCCGUGUCCAgGg -3'
miRNA:   3'- caUGACGUUGCGG--------CGGCACAGGUgUu -5'
6742 5' -55.9 NC_001875.2 + 130702 0.68 0.741405
Target:  5'- -cGCuUGC-AUGUaCGCCGUGUCCGCGu -3'
miRNA:   3'- caUG-ACGuUGCG-GCGGCACAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 78404 0.76 0.304859
Target:  5'- aGUGCUGCAcGCGCUgGCCGUGUgCGCGc -3'
miRNA:   3'- -CAUGACGU-UGCGG-CGGCACAgGUGUu -5'
6742 5' -55.9 NC_001875.2 + 59583 0.71 0.596189
Target:  5'- -cGCUGCAGCGUgGCCGacGUgCGCGAg -3'
miRNA:   3'- caUGACGUUGCGgCGGCa-CAgGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 86602 0.68 0.75134
Target:  5'- uGUACgacaagGCGacGCGCCGCC-UGUUCGCGc -3'
miRNA:   3'- -CAUGa-----CGU--UGCGGCGGcACAGGUGUu -5'
6742 5' -55.9 NC_001875.2 + 5046 0.67 0.799161
Target:  5'- -gGCUGCAAaGCCGCCGcagcuUGcacagCCGCAGu -3'
miRNA:   3'- caUGACGUUgCGGCGGC-----ACa----GGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 9891 0.76 0.304859
Target:  5'- -cGCUGCAACGCUGCCGcGcgcaCCACAAa -3'
miRNA:   3'- caUGACGUUGCGGCGGCaCa---GGUGUU- -5'
6742 5' -55.9 NC_001875.2 + 112709 0.72 0.504059
Target:  5'- -cGCUGaCGGCGCCGCCGUGguaggcgcgUCGCGc -3'
miRNA:   3'- caUGAC-GUUGCGGCGGCACa--------GGUGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.